Gene
| Gene Model ID | pfu_aug2.0_54.1_13500 |
|---|---|
| Locus | scaffold54.1 : 439018 ... 443536 : + |
| To GenomeBrowser | scaffold54.1:439018..443536 |
| Genes list of scaffold | scaffold54.1 |
| Synonym | pfu_aug1.0_6803.1_24087 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| myosin essential light chain | GO:0005509 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_54.1_13500.t1 | 1 | 1 | EF-hand_7 | 12 | 72 | 6.7e-11 | 42.1 | 4.1e-14 | 8.6e-11 | 41.8 |
| pfu_aug2.0_54.1_13500.t1 | 3 | 1 | EF-hand_1 | 12 | 39 | 6.9e-07 | 28.1 | 2.7e-09 | 5.8e-06 | 25.2 |
| pfu_aug2.0_54.1_13500.t1 | 2 | 1 | EF-hand_6 | 12 | 40 | 1.9e-06 | 27.2 | 2.2e-09 | 4.7e-06 | 26.0 |
| pfu_aug2.0_54.1_13500.t1 | 2 | 1 | EF-hand_8 | 16 | 31 | 4.8e-07 | 29.3 | 0.0006 | 1.3 | 8.7 |
| pfu_aug2.0_54.1_13500.t1 | 2 | 2 | EF-hand_8 | 24 | 71 | 4.8e-07 | 29.3 | 7.9e-09 | 1.7e-05 | 24.3 |
| pfu_aug2.0_54.1_13500.t1 | 3 | 2 | EF-hand_1 | 48 | 56 | 6.9e-07 | 28.1 | 1.1 | 2300.0 | -1.7 |
| pfu_aug2.0_54.1_13500.t1 | 3 | 3 | EF-hand_1 | 63 | 72 | 6.9e-07 | 28.1 | 0.27 | 580.0 | 0.2 |
| pfu_aug2.0_54.1_13500.t1 | 2 | 2 | EF-hand_6 | 67 | 72 | 1.9e-06 | 27.2 | 3.6 | 7500.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_54.1_13500.t1 | gi|40642994|emb|CAD91423.1| | myosin essential light chain [Crassostrea gigas] | 0.0 |
| pfu_aug2.0_54.1_13500.t1 | gi|675856682|ref|XP_009013901.1| | hypothetical protein HELRODRAFT_75335, partial [Helobdella robusta] | 9.0e-32 |
| pfu_aug2.0_54.1_13500.t1 | gi|676473355|ref|XP_009059791.1| | hypothetical protein LOTGIDRAFT_234281 [Lottia gigantea] | 3.0e-30 |
| pfu_aug2.0_54.1_13500.t1 | gi|676428732|ref|XP_009045371.1| | hypothetical protein LOTGIDRAFT_230202 [Lottia gigantea] | 9.0e-30 |
| pfu_aug2.0_54.1_13500.t1 | gi|524885520|ref|XP_005099366.1| | PREDICTED: myosin essential light chain, striated adductor muscle-like [Aplysia californica] | 1.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_54.1_13500.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_54.1_13500.t1 atgaacacccttgagcagggaacattcgccgactacatggaagctttcaagactttcgacagggaaggtcaaggttacat ttccggcgcagaacttaggcatcttctgtcttctttgggagagaggttgaccgatgatcaggtggacgagatcattagga atactgacttgcaagaagatttggaaggaaatgtcaaatatgaagaatttatcaagaaagtgatggccggcccataccca gattaa |
|
Protein
| Protein ID | pfu_aug2.0_54.1_13500.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_54.1_13500.t1 MNTLEQGTFADYMEAFKTFDREGQGYISGAELRHLLSSLGERLTDDQVDEIIRNTDLQEDLEGNVKYEEFIKKVMAGPYP D |
|