Gene
| Gene Model ID | pfu_aug2.0_540.1_00857 |
|---|---|
| Locus | scaffold540.1 : 114746 ... 116390 : + |
| To GenomeBrowser | scaffold540.1:114746..116390 |
| Genes list of scaffold | scaffold540.1 |
| Synonym | pfu_aug1.0_16135.1_18314 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tar dna-binding protein 43-like isoform x2 | GO:0000166 GO:0003676 GO:0019013 GO:0030529 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_540.1_00857.t1 | 1 | 1 | RRM_1 | 107 | 168 | 2.8e-15 | 55.6 | 8.2e-19 | 6.1e-15 | 54.6 |
| pfu_aug2.0_540.1_00857.t1 | 1 | 1 | RRM_6 | 107 | 172 | 1.7e-10 | 40.7 | 4.2e-14 | 3.1e-10 | 39.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_540.1_00857.t1 | gi|524877261|ref|XP_005095336.1| | PREDICTED: TAR DNA-binding protein 43-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_540.1_00857.t1 | gi|524877265|ref|XP_005095338.1| | PREDICTED: TAR DNA-binding protein 43-like isoform X5 [Aplysia californica] | 0.0 |
| pfu_aug2.0_540.1_00857.t1 | gi|524877263|ref|XP_005095337.1| | PREDICTED: TAR DNA-binding protein 43-like isoform X4 [Aplysia californica] | 0.0 |
| pfu_aug2.0_540.1_00857.t1 | gi|524877259|ref|XP_005095335.1| | PREDICTED: TAR DNA-binding protein 43-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_540.1_00857.t1 | gi|524877257|ref|XP_005095334.1| | PREDICTED: TAR DNA-binding protein 43-like isoform X1 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_540.1_00857.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00857.t1 atgtctcagtacattcaggtagctgaagatgaaattgaggagccaattgaaattcccagtgaagaggatgggtcactctt gttaacaacacttggagcacagtttcctggtgcctgtggaatgaaatatagaaatcctgccactgggaacttcaggggta taagactgtctgaaggacgcttgcatccaccggacggtgtctggggacacttcatttatatagtagtgtttccaaaagaa aacaaaagaaaaggagatgaagcagttgagaatccgcatgccaaaacaaaatgtttggataaacagagatgtagtgacct tattgtactagggctgccctggaagagtactgaggatgatctacgtagatacttcagtggttacggagatctactcttag ttcaggtaaagagagatgtcaaaacaggacagtcaaaaggatttggattcatcaggtttgccgagtatgaatcacaggcc aaagttgtatcacagcgacatctcatagacgggcgatggtgtgacgtcactattccaaactcaaacgtgagcactaatgt tgggaacctctga |
|
Protein
| Protein ID | pfu_aug2.0_540.1_00857.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00857.t1 MSQYIQVAEDEIEEPIEIPSEEDGSLLLTTLGAQFPGACGMKYRNPATGNFRGIRLSEGRLHPPDGVWGHFIYIVVFPKE NKRKGDEAVENPHAKTKCLDKQRCSDLIVLGLPWKSTEDDLRRYFSGYGDLLLVQVKRDVKTGQSKGFGFIRFAEYESQA KVVSQRHLIDGRWCDVTIPNSNVSTNVGNL |
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