Gene
| Gene Model ID | pfu_aug2.0_540.1_00858 |
|---|---|
| Locus | scaffold540.1 : 117006 ... 121231 : + |
| To GenomeBrowser | scaffold540.1:117006..121231 |
| Genes list of scaffold | scaffold540.1 |
| Synonym | pfu_aug1.0_31278.1_55379 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tar dna-binding protein 43-like | GO:0000166 GO:0003677 GO:0003723 GO:0005634 GO:0006355 GO:0006397 GO:0008380 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_540.1_00858.t1 | 1 | 1 | RRM_1 | 6 | 55 | 1.4e-10 | 40.6 | 6.7e-14 | 2.5e-10 | 39.8 |
| pfu_aug2.0_540.1_00858.t1 | 1 | 1 | RRM_6 | 6 | 65 | 3.9e-10 | 39.5 | 1.6e-13 | 5.9e-10 | 38.9 |
| pfu_aug2.0_540.1_00858.t1 | 1 | 1 | RRM_5 | 20 | 71 | 1.2e-06 | 28.3 | 6.1e-10 | 2.3e-06 | 27.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_540.1_00858.t1 | gi|524912504|ref|XP_005111099.1| | PREDICTED: TAR DNA-binding protein 43-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_540.1_00858.t1 | gi|524912496|ref|XP_005111095.1| | PREDICTED: TAR DNA-binding protein 43-like [Aplysia californica] | 4.06377e-44 |
Transcript
| Transcript ID | pfu_aug2.0_540.1_00858.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00858.t1 atgataagtcgtaaagtgttcattgccagatgtacagaggatataacggcagatgaccttcgtcaatatttctctaagtt tggggaggttgtagatgtgttcatacccagacccttcagggcttttgcttttgtcacattctctgatcctaaggttgcaa gggccctttgtggggaggaccacattattaaaggtgccagtgttcacgttaccacagcagctcccaaaaactctgataag agtgataacagagggaatgggggaggtggatcatactccagaatggctcatggtggtgggaggggacccccaactcaggg agggtggaaccagggtaaaccaatagcaacagtagctactgtacagcctgttcctgaccctaacctagccaatcagtttg gtatgaatctctttaattctgcaatgttggctgccgcacaagctgtcctacaaggtcaaggtcagatacctgccccccaa cagcaacctgtcgcccaaggtcattctgatccctttgcagcacagaacaaccgagcattcgacacgagcagacagaatca aggcttcttctccggaggtacgcagtggggagctaacgatacaagtaatactgcaggtgggtatgcaagctggggtggag gcagtcagcaacaaagtgggtggagctaa |
|
Protein
| Protein ID | pfu_aug2.0_540.1_00858.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00858.t1 MISRKVFIARCTEDITADDLRQYFSKFGEVVDVFIPRPFRAFAFVTFSDPKVARALCGEDHIIKGASVHVTTAAPKNSDK SDNRGNGGGGSYSRMAHGGGRGPPTQGGWNQGKPIATVATVQPVPDPNLANQFGMNLFNSAMLAAAQAVLQGQGQIPAPQ QQPVAQGHSDPFAAQNNRAFDTSRQNQGFFSGGTQWGANDTSNTAGGYASWGGGSQQQSGWS |
|