Gene
| Gene Model ID | pfu_aug2.0_540.1_00861 |
|---|---|
| Locus | scaffold540.1 : 150459 ... 157395 : - |
| To GenomeBrowser | scaffold540.1:150459..157395 |
| Genes list of scaffold | scaffold540.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_540.1_00861.t1 | 2 | 1 | Mpv17_PMP22 | 28 | 49 | 2.1e-22 | 78.5 | 0.18 | 2600.0 | -1.9 |
| pfu_aug2.0_540.1_00861.t1 | 2 | 2 | Mpv17_PMP22 | 94 | 158 | 2.1e-22 | 78.5 | 1.4e-26 | 2.1e-22 | 78.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_540.1_00861.t1 | gi|736166245|ref|XP_010764565.1| | PREDICTED: mpv17-like protein [Notothenia coriiceps] | 4.0e-31 |
| pfu_aug2.0_540.1_00861.t1 | gi|597738280|ref|XP_007231359.1| | PREDICTED: mpv17-like protein [Astyanax mexicanus] | 2.0e-29 |
| pfu_aug2.0_540.1_00861.t1 | gi|734611047|ref|XP_010732908.1| | PREDICTED: LOW QUALITY PROTEIN: mpv17-like protein [Larimichthys crocea] | 3.0e-29 |
| pfu_aug2.0_540.1_00861.t1 | gi|658832050|ref|XP_008407199.1| | PREDICTED: mpv17-like protein isoform X2 [Poecilia reticulata] | 5.0e-29 |
| pfu_aug2.0_540.1_00861.t1 | gi|617376208|ref|XP_007543628.1| | PREDICTED: mpv17-like protein [Poecilia formosa] | 1.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_540.1_00861.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00861.t1 atgactctcacacataccatggctcagtatgccactctgtgggctattgctgattacatggaacagaaatgcatatcaaa gaaacccaaacaggactggcacaaatcattccgcatggtaacggtcggggcattcgttatagctccgttagtttatggct gggtgagagtagcagaaagaatatctcctggaaatcagctacgcaatgtcctgaaaaaagtcttcattggtcagactata tttgcaccatttgctattagtacattttatgcttccactagccttttagagggaaaatcagtggagcaatttaaatctga atggagtgaaaaattcccagcaacctatactaataatttgaaggtgtggccggcagtgcaggttgtgaactttagttatg taccgttaatacacagacctaaggtgatgggatgtgtgtcgtttatttggtcaatgtatctgtgcttccagaaagaggac acacatgctgaggatgatgtgtcagtgcagacagagttatcgtctacggacattgtagctgatagtaatgtgttaagtat agaacctggtactaaagtagaattaaataatacctcagacaaacaaagtcccaagccaaacaaggatcagaggtga |
|
Protein
| Protein ID | pfu_aug2.0_540.1_00861.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00861.t1 MTLTHTMAQYATLWAIADYMEQKCISKKPKQDWHKSFRMVTVGAFVIAPLVYGWVRVAERISPGNQLRNVLKKVFIGQTI FAPFAISTFYASTSLLEGKSVEQFKSEWSEKFPATYTNNLKVWPAVQVVNFSYVPLIHRPKVMGCVSFIWSMYLCFQKED THAEDDVSVQTELSSTDIVADSNVLSIEPGTKVELNNTSDKQSPKPNKDQR |
|