Gene
| Gene Model ID | pfu_aug2.0_540.1_00863 |
|---|---|
| Locus | scaffold540.1 : 160960 ... 164765 : - |
| To GenomeBrowser | scaffold540.1:160960..164765 |
| Genes list of scaffold | scaffold540.1 |
| Synonym | pfu_aug1.0_12065.1_32155 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_540.1_00863.t1 | 2 | 1 | Mpv17_PMP22 | 4 | 30 | 2.3e-22 | 78.3 | 0.0056 | 42.0 | 3.8 |
| pfu_aug2.0_540.1_00863.t1 | 2 | 2 | Mpv17_PMP22 | 94 | 158 | 2.3e-22 | 78.3 | 7.2e-25 | 5.4e-21 | 74.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_540.1_00863.t1 | gi|318056248|ref|NP_001188186.1| | mpv17-like protein [Ictalurus punctatus] | 4.0e-27 |
| pfu_aug2.0_540.1_00863.t1 | gi|675706154|ref|XP_009007414.1| | PREDICTED: mpv17-like protein [Callithrix jacchus] | 6.0e-27 |
| pfu_aug2.0_540.1_00863.t1 | gi|551491541|ref|XP_005797341.1| | PREDICTED: mpv17-like protein-like [Xiphophorus maculatus] | 1.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_540.1_00863.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00863.t1 atgaccctccttcatactatggtgcagtatgccacactgtggaccatagctgatattacagagcagaaatatatatcaaa gaaacttcaacatgactggcacaaaacataccgtatggccactgtgggaacattggtcgtggcgccacttgtgtttggat ggattcgattagcagagagaatttccccaggaaaacactggtttagcgtctttaggaaagtactcatggaccaagttgtc tttgcacccatagcagtatcaagtttctatgcttcaacatgtttcatggaaagaaaatcattgcagcagtttcaagacga atggaagaagaagtttccaagaacttacattaatggtatgaagatctggccagcagtacagctgattaactttagttttg taccgatcgttcacagacctaaagtcatatcctgtgtgtcctttggatggtctatatatctgtgttttcagaaagaggac gcgcataatgagaataaagcagccatcagccctaccgtagagggggataaattagttatagcaaacagtgtagttaacgt cacagatattaaacagtgttctgacactcagcctggtgtaatgatcagggaaaaactcacagtaatggcagcaggaaaac acaaagactgtgtagaaaacaaagtgaaataa |
|
Protein
| Protein ID | pfu_aug2.0_540.1_00863.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00863.t1 MTLLHTMVQYATLWTIADITEQKYISKKLQHDWHKTYRMATVGTLVVAPLVFGWIRLAERISPGKHWFSVFRKVLMDQVV FAPIAVSSFYASTCFMERKSLQQFQDEWKKKFPRTYINGMKIWPAVQLINFSFVPIVHRPKVISCVSFGWSIYLCFQKED AHNENKAAISPTVEGDKLVIANSVVNVTDIKQCSDTQPGVMIREKLTVMAAGKHKDCVENKVK |
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