Gene
| Gene Model ID | pfu_aug2.0_540.1_00864 |
|---|---|
| Locus | scaffold540.1 : 173151 ... 187195 : - |
| To GenomeBrowser | scaffold540.1:173151..187195 |
| Genes list of scaffold | scaffold540.1 |
| Synonym | pfu_aug1.0_5798.1_38213 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_540.1_00864.t1 | 1 | 1 | Ribosomal_L3 | 57 | 172 | 2.0e-21 | 76.5 | 1.9e-25 | 2.8e-21 | 76.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_540.1_00864.t1 | gi|676494443|ref|XP_009066565.1| | hypothetical protein LOTGIDRAFT_108795 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_540.1_00864.t1 | gi|524894632|ref|XP_005103811.1| | PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_540.1_00864.t1 | gi|645000754|ref|XP_008207206.1| | PREDICTED: 39S ribosomal protein L3, mitochondrial [Nasonia vitripennis] | 0.0 |
| pfu_aug2.0_540.1_00864.t1 | gi|752861643|ref|XP_011258520.1| | PREDICTED: 39S ribosomal protein L3, mitochondrial [Camponotus floridanus] | 0.0 |
| pfu_aug2.0_540.1_00864.t1 | gi|157134546|ref|XP_001656360.1| | AAEL013116-PA [Aedes aegypti] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_540.1_00864.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00864.t1 atgaactctgtcggttggaaaccttggtggaggaatatgtacggcagtgtaacagtaggagctatgagctgtgatccctc agggtttactaaagcctacaacaatattttcctgaatgcaggagttccaacaaaaagaaaattgacacgatttctggtga caccaaatgctgcagtacaaccaggaacaagactaaatgttatgcacttcaaagttggagactatattgacctccaggct aaaactgtggaccatggattccagggtgtagttaagagatggggttttaaaggacaacgtcaaagtcacggtgtaggaaa gagtgagcgtagacctggagccactggagtagggaggagaggcagtggtatcataaaaggaaagaaacttccaggtcata tgggcagtgactggaacacaagtaaagggtcacaaatagtgcgtatcaacacgaagtataatttgatctacgtacgtggt ccatgctcaggtcccacacattgttacgtacgtataatggacacatgtttaccagtcaggagagacgagatagagaagtc agagaatcatccatccatgccgactaccttcccagaagacctcacagaggaagttcctgaggaatatttccacgagtccc tacatcagtttaacgagccatccatcacatattctgtggatgaggactctaaataa |
|
Protein
| Protein ID | pfu_aug2.0_540.1_00864.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00864.t1 MNSVGWKPWWRNMYGSVTVGAMSCDPSGFTKAYNNIFLNAGVPTKRKLTRFLVTPNAAVQPGTRLNVMHFKVGDYIDLQA KTVDHGFQGVVKRWGFKGQRQSHGVGKSERRPGATGVGRRGSGIIKGKKLPGHMGSDWNTSKGSQIVRINTKYNLIYVRG PCSGPTHCYVRIMDTCLPVRRDEIEKSENHPSMPTTFPEDLTEEVPEEYFHESLHQFNEPSITYSVDEDSK |
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