Gene
| Gene Model ID | pfu_aug2.0_540.1_00869 |
|---|---|
| Locus | scaffold540.1 : 279136 ... 292297 : + |
| To GenomeBrowser | scaffold540.1:279136..292297 |
| Genes list of scaffold | scaffold540.1 |
| Synonym | pfu_aug1.0_7216.1_31350 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_540.1_00869.t1 | 1 | 1 | C1q | 58 | 184 | 4.0e-16 | 59.1 | 3.6e-20 | 5.4e-16 | 58.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_540.1_00869.t1 | gi|675641379|ref|XP_009008580.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 6 isoform X2 [Callithrix jacchus] | 3.0e-11 |
| pfu_aug2.0_540.1_00869.t1 | gi|34535340|dbj|BAC87283.1| | unnamed protein product [Homo sapiens] | 4.0e-11 |
| pfu_aug2.0_540.1_00869.t1 | gi|675641377|ref|XP_009008577.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 6 isoform X1 [Callithrix jacchus] | 9.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_540.1_00869.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00869.t1 atgacttttctttttctgttatggctcagtgtagagacaacgattggtcagacattggtttctgaaaaatgcgacaacaa aggttcgcagcaagagctggatgcattgaaaaggcaggtccatacactcatgcaaacacccggcaaatctgttcttccag cagtgtcgttctttgctacctacgacagacgtggatatattttagctttgaacgaaactgccatatttaccagagtactc agcaatgtcggaggtggatatgacgtcactacaggtaattttgtggctccataccgcggtatctactccatatcagccac tattatgagtgaaaacgacagtgacatccatattggcgtaatgaagaatgagaagctactgatgactctttacagcaatc gtaacacttacccacaatcctccgctacagttcatcttccgctggacattaacgacaggatatatctgatcagtacctta aggccaaacaaaaaactgcatgtcttcccaaattcaccaaatttttacaatgctttttctggagctctcgttgttctttt atga |
|
Protein
| Protein ID | pfu_aug2.0_540.1_00869.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_540.1_00869.t1 MTFLFLLWLSVETTIGQTLVSEKCDNKGSQQELDALKRQVHTLMQTPGKSVLPAVSFFATYDRRGYILALNETAIFTRVL SNVGGGYDVTTGNFVAPYRGIYSISATIMSENDSDIHIGVMKNEKLLMTLYSNRNTYPQSSATVHLPLDINDRIYLISTL RPNKKLHVFPNSPNFYNAFSGALVVLL |
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