Gene
| Gene Model ID | pfu_aug2.0_545.1_17549 |
|---|---|
| Locus | scaffold545.1 : 122258 ... 125765 : - |
| To GenomeBrowser | scaffold545.1:122258..125765 |
| Genes list of scaffold | scaffold545.1 |
| Synonym | pfu_aug1.0_1388.1_22566 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| calmodulin 4 | GO:0004871 GO:0005509 GO:0005513 GO:0005634 GO:0005829 GO:0005886 GO:0005982 GO:0009612 GO:0009909 GO:0019722 GO:0030048 GO:0051645 GO:0051646 GO:0060151 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_545.1_17549.t1 | 2 | 1 | EF-hand_7 | 19 | 79 | 5.0e-24 | 84.2 | 5.7e-13 | 1.1e-09 | 38.3 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 1 | EF-hand_6 | 19 | 48 | 2.6e-19 | 67.2 | 1.7e-08 | 3.1e-05 | 23.4 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 1 | EF-hand_8 | 20 | 35 | 1.8e-23 | 81.8 | 0.0015 | 2.8 | 7.6 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 1 | EF-hand_1 | 20 | 47 | 3.4e-23 | 79.1 | 4.3e-08 | 8.1e-05 | 21.6 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 1 | EF-hand_5 | 20 | 35 | 1.6e-06 | 27.1 | 0.00047 | 0.88 | 9.0 |
| pfu_aug2.0_545.1_17549.t1 | 2 | 1 | EF-hand_9 | 24 | 83 | 1.8e-07 | 30.9 | 1.6e-06 | 0.003 | 17.4 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 2 | EF-hand_8 | 40 | 82 | 1.8e-23 | 81.8 | 2.6e-10 | 4.8e-07 | 29.3 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 2 | EF-hand_1 | 55 | 82 | 3.4e-23 | 79.1 | 5.7e-06 | 0.011 | 15.0 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 2 | EF-hand_6 | 58 | 81 | 2.6e-19 | 67.2 | 0.0009 | 1.7 | 8.7 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 2 | EF-hand_5 | 58 | 77 | 1.6e-06 | 27.1 | 0.37 | 680.0 | -0.2 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 3 | EF-hand_8 | 91 | 118 | 1.8e-23 | 81.8 | 4.0e-06 | 0.0073 | 15.8 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 3 | EF-hand_1 | 92 | 117 | 3.4e-23 | 79.1 | 2.3e-09 | 4.3e-06 | 25.6 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 3 | EF-hand_6 | 92 | 119 | 2.6e-19 | 67.2 | 1.1e-09 | 2.0e-06 | 27.2 |
| pfu_aug2.0_545.1_17549.t1 | 2 | 2 | EF-hand_7 | 93 | 153 | 5.0e-24 | 84.2 | 3.2e-15 | 5.9e-12 | 45.5 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 3 | EF-hand_5 | 93 | 116 | 1.6e-06 | 27.1 | 4.0e-06 | 0.0075 | 15.5 |
| pfu_aug2.0_545.1_17549.t1 | 2 | 2 | EF-hand_9 | 96 | 145 | 1.8e-07 | 30.9 | 0.00011 | 0.2 | 11.5 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 4 | EF-hand_8 | 122 | 155 | 1.8e-23 | 81.8 | 1.2e-09 | 2.2e-06 | 27.1 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 4 | EF-hand_1 | 129 | 155 | 3.4e-23 | 79.1 | 1.2e-07 | 0.00022 | 20.3 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 4 | EF-hand_5 | 132 | 151 | 1.6e-06 | 27.1 | 0.039 | 73.0 | 2.9 |
| pfu_aug2.0_545.1_17549.t1 | 4 | 4 | EF-hand_6 | 134 | 153 | 2.6e-19 | 67.2 | 0.00092 | 1.7 | 8.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_545.1_17549.t1 | gi|115464615|ref|NP_001055907.1| | Os05g0491100 [Oryza sativa Japonica Group] | 5.60519e-45 |
| pfu_aug2.0_545.1_17549.t1 | gi|242017500|ref|XP_002429226.1| | calmodulin, putative [Pediculus humanus corporis] | 5.60519e-45 |
Transcript
| Transcript ID | pfu_aug2.0_545.1_17549.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_545.1_17549.t1 atgagcagaggagtataccccagggtggagggcctctctaatgaaaatatcgcaagaatacgagaggcgttcagtacatt tgaccgagatggggagggaaaaatccttgctagggaactgggatctataatgaggtcccttggacatgacccttccccgg cagaaataacagacatgctcaacgaagtggatttcgaagggacaggattaatcggttttgcagactttcaaattttgatg gcaaaaagagtgaaaaaccttagtatggcagacgaactcaatgacgctttccgagtgttcgataaagacaggagaggttt tgtttcaactaatgatttcaaacaagtgttattacaactcggagatcacgtgacgccagaggatgcagaggagatgatca gggaggcagatcaaaataaatacggatatattgaatatgcagaatttattaacgctatggtacataaatga |
|
Protein
| Protein ID | pfu_aug2.0_545.1_17549.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_545.1_17549.t1 MSRGVYPRVEGLSNENIARIREAFSTFDRDGEGKILARELGSIMRSLGHDPSPAEITDMLNEVDFEGTGLIGFADFQILM AKRVKNLSMADELNDAFRVFDKDRRGFVSTNDFKQVLLQLGDHVTPEDAEEMIREADQNKYGYIEYAEFINAMVHK |
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