Gene
| Gene Model ID | pfu_aug2.0_545.1_17555 |
|---|---|
| Locus | scaffold545.1 : 260503 ... 284956 : - |
| To GenomeBrowser | scaffold545.1:260503..284956 |
| Genes list of scaffold | scaffold545.1 |
| Synonym | pfu_aug1.0_165.1_14834 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_545.1_17555.t1 | 3 | 1 | RRM_6 | 57 | 112 | 2.7e-24 | 84.9 | 1.5e-09 | 4.4e-06 | 26.5 |
| pfu_aug2.0_545.1_17555.t1 | 4 | 1 | RRM_1 | 59 | 108 | 1.6e-20 | 72.4 | 2.2e-08 | 6.5e-05 | 22.4 |
| pfu_aug2.0_545.1_17555.t1 | 4 | 1 | RRM_5 | 78 | 126 | 4.3e-21 | 74.4 | 6.9e-06 | 0.02 | 14.7 |
| pfu_aug2.0_545.1_17555.t1 | 4 | 2 | RRM_5 | 136 | 164 | 4.3e-21 | 74.4 | 1.3e-06 | 0.0039 | 17.0 |
| pfu_aug2.0_545.1_17555.t1 | 4 | 2 | RRM_1 | 136 | 153 | 1.6e-20 | 72.4 | 0.0075 | 22.0 | 4.7 |
| pfu_aug2.0_545.1_17555.t1 | 3 | 2 | RRM_6 | 329 | 394 | 2.7e-24 | 84.9 | 3.4e-13 | 1.0e-09 | 38.2 |
| pfu_aug2.0_545.1_17555.t1 | 4 | 3 | RRM_1 | 337 | 394 | 1.6e-20 | 72.4 | 2.0e-06 | 0.0059 | 16.2 |
| pfu_aug2.0_545.1_17555.t1 | 4 | 3 | RRM_5 | 344 | 393 | 4.3e-21 | 74.4 | 5.6e-14 | 1.7e-10 | 40.6 |
| pfu_aug2.0_545.1_17555.t1 | 3 | 3 | RRM_6 | 455 | 505 | 2.7e-24 | 84.9 | 1.5e-06 | 0.0043 | 16.9 |
| pfu_aug2.0_545.1_17555.t1 | 4 | 4 | RRM_1 | 455 | 515 | 1.6e-20 | 72.4 | 7.2e-09 | 2.1e-05 | 24.0 |
| pfu_aug2.0_545.1_17555.t1 | 4 | 4 | RRM_5 | 476 | 504 | 4.3e-21 | 74.4 | 0.095 | 280.0 | 1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_545.1_17555.t1 | gi|571508944|ref|XP_003251730.2| | PREDICTED: heterogeneous nuclear ribonucleoprotein L isoform X1 [Apis mellifera] | 0.0 |
| pfu_aug2.0_545.1_17555.t1 | gi|597799010|ref|XP_007261043.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform X3 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_545.1_17555.t1 | gi|645009656|ref|XP_008210506.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein L [Nasonia vitripennis] | 0.0 |
| pfu_aug2.0_545.1_17555.t1 | gi|759073101|ref|XP_011346187.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein L [Cerapachys biroi] | 0.0 |
| pfu_aug2.0_545.1_17555.t1 | gi|383856703|ref|XP_003703847.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_545.1_17555.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_545.1_17555.t1 atgaatggtcagtgcgccctatcggtgaaatttgtacaacaagggcagacaactcctaccgaaggcaagagaatggcgtc gggttacgacggacacatttcaaaacgtcaaagaacggataattccgacagggatgatgatcgtatcaacccggccccgt cccctgtcgtacatgtcagaggtttgacggatttggtaacggagggaaatctcatgcaagctgtgcaacactttggtgtt gtcagctatgtcatgatgatgtcaaggaagcatatggcccttatagaattcgagaacatcacaggggcacgtaattgcgt agagtattcacagcacaatcaaatctttgtcggagaccacccagctttctttaattactcaacaagttccaagattcaac gaccaagcattgattctgccaagagagccaaacagaacctgaacggagcagatatttactctggatgttgtacactaaaa atagaatttgcaaagcccacaagactgaatgtgatccgtaacgatcaggacagctgggattatactaaccctaatctagg gaaggagccacaaggtcagcagggaagacctgccccattattacaggatcctagatattctaacatacccaccccatatg aacaaaagatgaactcaggatacggaggtcaggccccaccacaaggaggaggtggagctgggtaccagggacaaggtggg tacagtggcccaccccagcagggatacggaagcccacagggaggatatagcccgcctggtagtgggggatatggaatgta cgatcaaggagatggatatgggggctaccctccgtcatctagcaggcagtatgatatgggaccaccatccgataggtact catccagcaagccacccatgcatgatcgtggatacggacgtcccccatcgacttactctgacggtcctcctccaccaggg ggctctatgattcagggctcggtactgatggtgtacggtctcgacatggaacgaataaactgcgacaaacttttcaatct attctgtctgtatggaaatgttgtcaggatcaagtttttgaagagtaaagagggctcagccatgatacagatgggggatt ccttggcactagaacgatgcatgcagaatctcaactacattcacttctttggatcaaaagtccagcttggacactccaaa caggctttccttcaagacgtgccgaacccccacgagcttcctgacgggagtccttcattcaaagatttcatgggcagccg aaataataggttcgctaatccagaggcagcagctaaaaatcgtatcatgtcacctaccaagactttacattacttcaatg ccccacctggtctcaccaaggaagaaatagaggagatgtttgagaaatgtggcacagagaagccaactaaaatcaaacag tttaatacaaaaaatgagagaagctccactggattgttacagtttgacagtaagggtgatgctatggaagctctcatctc tgtcaatcattactccctacccaaccctactggcaaaaatcccttcatcttcaaagtttgtttctccgggacaacagtag acagagagagagattag |
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Protein
| Protein ID | pfu_aug2.0_545.1_17555.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_545.1_17555.t1 MNGQCALSVKFVQQGQTTPTEGKRMASGYDGHISKRQRTDNSDRDDDRINPAPSPVVHVRGLTDLVTEGNLMQAVQHFGV VSYVMMMSRKHMALIEFENITGARNCVEYSQHNQIFVGDHPAFFNYSTSSKIQRPSIDSAKRAKQNLNGADIYSGCCTLK IEFAKPTRLNVIRNDQDSWDYTNPNLGKEPQGQQGRPAPLLQDPRYSNIPTPYEQKMNSGYGGQAPPQGGGGAGYQGQGG YSGPPQQGYGSPQGGYSPPGSGGYGMYDQGDGYGGYPPSSSRQYDMGPPSDRYSSSKPPMHDRGYGRPPSTYSDGPPPPG GSMIQGSVLMVYGLDMERINCDKLFNLFCLYGNVVRIKFLKSKEGSAMIQMGDSLALERCMQNLNYIHFFGSKVQLGHSK QAFLQDVPNPHELPDGSPSFKDFMGSRNNRFANPEAAAKNRIMSPTKTLHYFNAPPGLTKEEIEEMFEKCGTEKPTKIKQ FNTKNERSSTGLLQFDSKGDAMEALISVNHYSLPNPTGKNPFIFKVCFSGTTVDRERD |
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