Gene
| Gene Model ID | pfu_aug2.0_547.1_24163 |
|---|---|
| Locus | scaffold547.1 : 33646 ... 74465 : - |
| To GenomeBrowser | scaffold547.1:33646..74465 |
| Genes list of scaffold | scaffold547.1 |
| Synonym | pfu_aug1.0_5986.1_16809 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_547.1_24163.t1 | 11 | 1 | Collagen | 372 | 434 | 0.0 | 483.4 | 8.5e-10 | 4.2e-06 | 26.1 |
| pfu_aug2.0_547.1_24163.t1 | 11 | 2 | Collagen | 468 | 525 | 0.0 | 483.4 | 1.1e-12 | 5.3e-09 | 35.4 |
| pfu_aug2.0_547.1_24163.t1 | 11 | 3 | Collagen | 495 | 553 | 0.0 | 483.4 | 2.0e-08 | 0.0001 | 21.7 |
| pfu_aug2.0_547.1_24163.t1 | 11 | 4 | Collagen | 585 | 627 | 0.0 | 483.4 | 3.0 | 15000.0 | -19.0 |
| pfu_aug2.0_547.1_24163.t1 | 11 | 5 | Collagen | 738 | 796 | 0.0 | 483.4 | 3.0 | 15000.0 | -52.2 |
| pfu_aug2.0_547.1_24163.t1 | 11 | 6 | Collagen | 874 | 896 | 0.0 | 483.4 | 3.0 | 15000.0 | -32.1 |
| pfu_aug2.0_547.1_24163.t1 | 11 | 7 | Collagen | 990 | 1036 | 0.0 | 483.4 | 3.0 | 15000.0 | -19.7 |
| pfu_aug2.0_547.1_24163.t1 | 11 | 8 | Collagen | 1104 | 1161 | 0.0 | 483.4 | 3.0 | 15000.0 | -39.5 |
| pfu_aug2.0_547.1_24163.t1 | 11 | 9 | Collagen | 1227 | 1285 | 0.0 | 483.4 | 2.6e-09 | 1.3e-05 | 24.6 |
| pfu_aug2.0_547.1_24163.t1 | 11 | 10 | Collagen | 1293 | 1351 | 0.0 | 483.4 | 6.7e-11 | 3.3e-07 | 29.7 |
| pfu_aug2.0_547.1_24163.t1 | 11 | 11 | Collagen | 1341 | 1399 | 0.0 | 483.4 | 1.7e-12 | 8.5e-09 | 34.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_547.1_24163.t1 | gi|751218445|ref|XP_011162257.1| | PREDICTED: collagen alpha-1(XI) chain-like [Solenopsis invicta] | 0.0 |
| pfu_aug2.0_547.1_24163.t1 | gi|632940734|ref|XP_007885477.1| | PREDICTED: collagen alpha-1(XI) chain isoform X2 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_547.1_24163.t1 | gi|499037862|ref|XP_004569577.1| | PREDICTED: collagen alpha-1(XI) chain isoform X3 [Maylandia zebra] | 0.0 |
| pfu_aug2.0_547.1_24163.t1 | gi|642938800|ref|XP_008199891.1| | PREDICTED: collagen alpha-1(V) chain-like [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_547.1_24163.t1 | gi|617645827|ref|XP_007532732.1| | PREDICTED: collagen alpha-1(XI) chain isoform X8 [Erinaceus europaeus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_547.1_24163.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_547.1_24163.t1 atggcgcaaacgtgccactttcaatcgattctaacatttgaaagtaccacatcatcactcaaagcttttatgactgtgcc cgatgcagtagatctactcagtataacaaacatcaacacaaccgactcattagccaatggattctgcgcaggacgtgatg ataatagagcattccttgttacgggcaatgaacaacttaatgtggaccttaaagacgttttcaaaaatgcagtagatcta ctcagtataacaaacatcaacactaccgactcaatagccaatggattctgcgcaggacgtgatgataatagagcattcct tgttacgggcaatgaacaacttaatgtggaccttaaagacgttttcaaaaaccctataggagatttttcattcatcgcaa ccttaagacaacatcctcgaaaagttcgcactacggataacaaccttgacgttcccctcctgacggtatattctaatgac gccatattagtaatgggaatctacgtaggcaaaaacccagtgttcgtttacaaggacgaggaaatgggaacggaggacag gatacccctagaatggaacaccaacgacggcgaatggcatcggataggaatcagtatcacaggacaaatgtttaccgcct ggtttgactgtaatatccaaaaggaaaatgtattatttaaccgaagcaaagaggcgggacgtgctttcagccaagaaggt ttagtattcctcggacgtgacctcaacgactcaccggaatttaagggagagatccaggatttgatctatgttcctgaccc tgacgcggcatcaagacattgcgcttactattgtccagcatgtactcaagattatgccaagcaaatagtttctgtcagcc aagagtatgaaaccattgaaggtggacaatatgccatggataaaactggaggggtaatggttgacaaatccggggccggc ttgcttatagacgctaaaactggactacctgtaggtcaagaacaactagctatgataggaaaaacaggaccaccacttgt tatggacaagacaggaatgcctttaattgaatatgatgctcaaactggagtttcctatgcataccgttatggacaaccag gtcccccgggtccacagggaccaccagggcctccaggacagaaaggagaacagggcttttctggaagagacggtattccg ggagcagtaggaagagttggtcccccaggccacgtttttatcattccgggcttttctggaagagacggtattccgggagc agtaggaagagttggtcccccaggccacgtttttatcattccgatgaactggaattccaagacaggagctcaggcacaag cattccggcagatgctttctcaacatatggttgcaatgagaggtacacctggaccgcagggaatgacgggaaatgctgga cctccaggaccacaaggagaggaaggtttaaaaggagacgtgggcaacccaggtgaacagggtattaccggcccacaagg atttcaaggagccccgggaattcccggtaataggggacgacctggttatgatggagaccgtggagagctaggacctcctg gtgacaagggagaaacgggataccccggaatgcctggcccatcgggaatgaaaggagataggggagatccaggagaagtc ggtccaatgggtcctgcaggtgaaatggggccacgtggtttcttaggaccaagaggacgaccaggaccaatgggctcgcc gggcgtaccaggttcggaaggatcaactggaccaaagggtaatcagggtaacactggtggcccaggagctccaggacagt caggtgcacccggaccattgggaccacctgggcctccaggacctcttggaccacagggaataatgggtcctcatggtact cctggacttccgggacttccaggaccacttggacctcccggccttccaggacaagatggtccagtaggagggaaaggaga acagggaccattaggtcttcaaggaatcggcgggtatccaggagcgcgtggtgttaagggtaatccgggaccacgcggtg aatcaggaccagtgggacctgctggcgaaaagggtcgtccaggagttcagggtttgccaggatatccaggagctcaaggc aaaccgggagaagttggtcgcggaggaaggaggggacgtagaggaaaccgggggaaacctggtcttccagggcctcatgg tgatcggggagaccgtggacctaggggcggtcctggggagagaggcaaacaaggcattccaggaccggcaggaccaaaag gtgataacggacaaccaggtcccccgggtttccagggcgaacaaggtatccaaggccctccgggtccaccaggattaatc gggccagttggaacaccaggtctcccaggaaaggacgggctacagggtccaacaggggaaagaggtttaccgggtcttcc gggaaatccaggacaatcgggacctctcggagtaatgggaccaccgggaccagtaggagaaccaggtcctccaggggatc ccggcaatcctggtaaccctggtccaccaggaggtactggactgccgggagaaacaggtgatcgtggtcaaatgggactt ccaggcccccagggacctgacggtagacctgggcccccgggacctgctggatttacaggtgatagaggattcccaggatc accgggcaaagacggggaaagaggtgatattggacaacctggaccccaaggcccaaggggagagaaaggatcaatgggac cacccggttctgcaggaggtgtcgggatgcccggtcctccaggtccgctaggtcccgcaggagctagaggatcaaaggga gatgtgggtatcgacggaaatcctggacttcccggaccagaaggagaattaggtcctaggggataccctggacctgccgg cccagtcggacctccaggtgaaaacggtgataagggagagactggaccaccaggaagcaggggactaaagggcgagcatg gagaacagggaccacctgggccacagggtcctcaaggaccaatgggaaacatcggaccaccgggtccacctggagagcca ggcattcagggtattcagggaccaggaggtagtaagggaagtgttggatcaagaggtgcacctggaccacctggcctcca gggccaacaaggtctacctggcaccaagggtacaaagggagaaaacggcgacagaggaatgaatggaccaccaggagcac ccggaccaatgggagacccaggaccggccggaaatccgggacttccgggtggagcagggcctgcaggtccagagggcaaa caaggacagaagggtgaacagggcacggaaggagagccaggtccctcgggtaccgacgggataactggaccacccggagc accaggagctaaaggtgaaaacggcagacctggtcctcaaggtccgtctggattgagaggaccggctggtgttgacggac caaaaggtcatcctggtcttcccggacctgaaggaatacctggtccagtcggagaactagggataaagggagagcctgga caggatggaccagaaggagaaagaggtcctgctggaccggcaggacagccaggtgtgccaggagagactggattacctgg acgaccaggaaaacagggtgaagctggtttaccgggcccaatgggagtccaaggaatatctggtgaaaaaggagaaagag gtggacgaggtccaatagggcaaagaggtccacctggagctcccggagacccaggagtaacaggcccacctggtccccca ggagcgccaggtcctgtcggcgaggcagggtcaactggactgcccggaagtcccggagaaagaggagtcattggaccaac cgggcccattggacaaaaaggcgaacgaggtgaaaagggcattaaaggacatatgggcgtggtagggcccccaggcgtga taggtgaccctggacctaaaggtgaacccggaccagctggtcctccaggggagagaggtgaaaaaggagatcttggacca gaaggacccactggatttactggacccgaaggacaacctggaatgccgggaccacctggaatacctggatcaaaaggaga atcgggaccaccaggatcgccaggtgctcctggtgaagcccaggccttcccagcagatctgcttggtgccccattcaagg cccgtaggagaagatcagcacctcaacagcaagctcaacaacagaactatgcaacaacatccattaatgacatgtttgca gacatgggaagcaaaccattggagcttggtgaaggcgttacaatgcttgttgggaaaatgtttgagggattgcatgaact ggacaaccaagttaacatgattatgaatcctaccggcaaaatagactaccctgctcaaacttgcaaggacatcaaaatga gttggcctgactctaagaacggtaagatgaaacaataa |
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Protein
| Protein ID | pfu_aug2.0_547.1_24163.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_547.1_24163.t1 MAQTCHFQSILTFESTTSSLKAFMTVPDAVDLLSITNINTTDSLANGFCAGRDDNRAFLVTGNEQLNVDLKDVFKNAVDL LSITNINTTDSIANGFCAGRDDNRAFLVTGNEQLNVDLKDVFKNPIGDFSFIATLRQHPRKVRTTDNNLDVPLLTVYSND AILVMGIYVGKNPVFVYKDEEMGTEDRIPLEWNTNDGEWHRIGISITGQMFTAWFDCNIQKENVLFNRSKEAGRAFSQEG LVFLGRDLNDSPEFKGEIQDLIYVPDPDAASRHCAYYCPACTQDYAKQIVSVSQEYETIEGGQYAMDKTGGVMVDKSGAG LLIDAKTGLPVGQEQLAMIGKTGPPLVMDKTGMPLIEYDAQTGVSYAYRYGQPGPPGPQGPPGPPGQKGEQGFSGRDGIP GAVGRVGPPGHVFIIPGFSGRDGIPGAVGRVGPPGHVFIIPMNWNSKTGAQAQAFRQMLSQHMVAMRGTPGPQGMTGNAG PPGPQGEEGLKGDVGNPGEQGITGPQGFQGAPGIPGNRGRPGYDGDRGELGPPGDKGETGYPGMPGPSGMKGDRGDPGEV GPMGPAGEMGPRGFLGPRGRPGPMGSPGVPGSEGSTGPKGNQGNTGGPGAPGQSGAPGPLGPPGPPGPLGPQGIMGPHGT PGLPGLPGPLGPPGLPGQDGPVGGKGEQGPLGLQGIGGYPGARGVKGNPGPRGESGPVGPAGEKGRPGVQGLPGYPGAQG KPGEVGRGGRRGRRGNRGKPGLPGPHGDRGDRGPRGGPGERGKQGIPGPAGPKGDNGQPGPPGFQGEQGIQGPPGPPGLI GPVGTPGLPGKDGLQGPTGERGLPGLPGNPGQSGPLGVMGPPGPVGEPGPPGDPGNPGNPGPPGGTGLPGETGDRGQMGL PGPQGPDGRPGPPGPAGFTGDRGFPGSPGKDGERGDIGQPGPQGPRGEKGSMGPPGSAGGVGMPGPPGPLGPAGARGSKG DVGIDGNPGLPGPEGELGPRGYPGPAGPVGPPGENGDKGETGPPGSRGLKGEHGEQGPPGPQGPQGPMGNIGPPGPPGEP GIQGIQGPGGSKGSVGSRGAPGPPGLQGQQGLPGTKGTKGENGDRGMNGPPGAPGPMGDPGPAGNPGLPGGAGPAGPEGK QGQKGEQGTEGEPGPSGTDGITGPPGAPGAKGENGRPGPQGPSGLRGPAGVDGPKGHPGLPGPEGIPGPVGELGIKGEPG QDGPEGERGPAGPAGQPGVPGETGLPGRPGKQGEAGLPGPMGVQGISGEKGERGGRGPIGQRGPPGAPGDPGVTGPPGPP GAPGPVGEAGSTGLPGSPGERGVIGPTGPIGQKGERGEKGIKGHMGVVGPPGVIGDPGPKGEPGPAGPPGERGEKGDLGP EGPTGFTGPEGQPGMPGPPGIPGSKGESGPPGSPGAPGEAQAFPADLLGAPFKARRRRSAPQQQAQQQNYATTSINDMFA DMGSKPLELGEGVTMLVGKMFEGLHELDNQVNMIMNPTGKIDYPAQTCKDIKMSWPDSKNGKMKQ |
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