Gene
| Gene Model ID | pfu_aug2.0_548.1_27526 |
|---|---|
| Locus | scaffold548.1 : 188069 ... 191748 : - |
| To GenomeBrowser | scaffold548.1:188069..191748 |
| Genes list of scaffold | scaffold548.1 |
| Synonym | pfu_aug1.0_1280.1_22516 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_548.1_27526.t1 | 2 | 1 | rve | 321 | 358 | 3.1e-22 | 78.9 | 0.67 | 3300.0 | -1.9 |
| pfu_aug2.0_548.1_27526.t1 | 2 | 2 | rve | 376 | 488 | 3.1e-22 | 78.9 | 3.0e-25 | 1.5e-21 | 76.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_548.1_27526.t1 | gi|308465921|ref|XP_003095217.1| | hypothetical protein CRE_22626 [Caenorhabditis remanei] | 0.0 |
| pfu_aug2.0_548.1_27526.t1 | gi|308468618|ref|XP_003096551.1| | hypothetical protein CRE_09733 [Caenorhabditis remanei] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_548.1_27526.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_548.1_27526.t1 atgtgtagttactatcgtcgtttcattcctaacttttcaaaaatagctgaaccattaatcgcacttacgagaaaatacgc gcgatttcactgggaccaaggctgccagaaagcctttgaatttttgaaagagagtcttaccgtcgtgccattattagcat atccggatgtaaaacttccgtacacattatattgtgacgcatcagatagcactgtaggtgcagtattatgtcaaaagaca tgcccagatcaaaacgatattccgaacatggtaaatgaaaaaccattgtattatcttagccacaaattatcggatacaca aacacgttggtctacaatcgagaaagagatgtacgctattcactacgcgttacagaaattataccactatctgcataaca gccaatttgtcataaaaactgaccacgcgccattgcgctacgttttagattcacctatgaagaataaaaagattcagctt tgggcactcaatctatccgcttacaattgcacggtcgagtacattaaaagtaaggaaaacacctgtgccgatttattgtc gcgaatgcccgaaggcgatactaaatcacatccaaatgacagtaaggacggtaatgaaccggaccttaacgacaatacgt atgagatcagtactttaaattcaaataggtttaacccaagggaccatgcaagtacaactacaaaagaccctgacattgca cttccggacatttcggacttacaaaaatttagtttagctgaagaacaggaaaaggacgacattgttcgtaaactccgtac tcagttgaaaaataacgacgcatcttccacggaccaaaaacgttatcttttggttgacgacgttttgtattatttgacaa acccagacgacgaaccactacttcgactttacgtcccaacacacttacaaaagtttgtattaaaacagtatcacgacgat cttggacgttatggagtagacaggactttctataacatcagaaatcgctattactggcctagactgttccccatcataaa cgagtacatttcaagctgtgttacttgtcaaacgagaaatctatcgtccgtacgtccaccgttagtggagacagacatac ccccttacccatgggcaaaggctggacttgacctctcgggaccttacccgacatctctgtctggaaataagtacatcatt gcatttatagatttatattctggattccccgaggcatttcctgtcaaagataaatctgcggataatatcacccatctttt attacacgaaatcttcccaagatacggttcattacttcagttggtaacagacaatgggacagagaatgtaaatagaaagg tcagagaaactttacaggcgttaaacatcaatcaaattactacctccttttaccaccctcaaggtaacgccaaggtcgag cgatttcatcgtacactccatgatattatggcaaaacaaatgcaatcagatcaatttgtatgggatttgtatttaccaag cgctttagccgctttcagattaagtataagtgactcgaccaagttttcgccctttttccttttgtacaatcgggatgtag ttcttccccttgacacgatactcaaacccagagaaaaatatacaggtgatgaccaacaccagatagcattacaaatgcag cataaaacttttatggctgtacatagaaatctcagaagggctaaaaaggtccaagctcgatatgcaaatagaaattctaa gcaggtcaattttcagataaatgaccccgtctatctgaaaaatcatgtcagaaagaacaaattcgatgttagatggcaac catactatcgtataatagaccagacatcccccgttagcttcgtaattaaaaatcagttggacggaaccactacgaaggca catgccgagcatttacgacttgcaaaacttgatgaatgggacatccctaaaaatgacgaaggtcgacctgtaagacgggc acgggagggatcctctgatgacgaagacgatatcccccttatggaattggcaaaacgatacagagaaaagaaaggacgac ttaaacaaaacccagcagataatactgaaacaagtaacgtaactttagacaggattaatgacacaagtagggatatggaa attgacgagggcaactctaccaaacagttaaccggcacaggaaatgatattgatatcctggaactaaaggcactcatgcg caaggaagaatctgtagctccatcggctccacagaaggacggaccgacgaacaacgtaaggccggtgtatcccgtccttg aactcgcaaacatttcaagttag |
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Protein
| Protein ID | pfu_aug2.0_548.1_27526.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_548.1_27526.t1 MCSYYRRFIPNFSKIAEPLIALTRKYARFHWDQGCQKAFEFLKESLTVVPLLAYPDVKLPYTLYCDASDSTVGAVLCQKT CPDQNDIPNMVNEKPLYYLSHKLSDTQTRWSTIEKEMYAIHYALQKLYHYLHNSQFVIKTDHAPLRYVLDSPMKNKKIQL WALNLSAYNCTVEYIKSKENTCADLLSRMPEGDTKSHPNDSKDGNEPDLNDNTYEISTLNSNRFNPRDHASTTTKDPDIA LPDISDLQKFSLAEEQEKDDIVRKLRTQLKNNDASSTDQKRYLLVDDVLYYLTNPDDEPLLRLYVPTHLQKFVLKQYHDD LGRYGVDRTFYNIRNRYYWPRLFPIINEYISSCVTCQTRNLSSVRPPLVETDIPPYPWAKAGLDLSGPYPTSLSGNKYII AFIDLYSGFPEAFPVKDKSADNITHLLLHEIFPRYGSLLQLVTDNGTENVNRKVRETLQALNINQITTSFYHPQGNAKVE RFHRTLHDIMAKQMQSDQFVWDLYLPSALAAFRLSISDSTKFSPFFLLYNRDVVLPLDTILKPREKYTGDDQHQIALQMQ HKTFMAVHRNLRRAKKVQARYANRNSKQVNFQINDPVYLKNHVRKNKFDVRWQPYYRIIDQTSPVSFVIKNQLDGTTTKA HAEHLRLAKLDEWDIPKNDEGRPVRRAREGSSDDEDDIPLMELAKRYREKKGRLKQNPADNTETSNVTLDRINDTSRDME IDEGNSTKQLTGTGNDIDILELKALMRKEESVAPSAPQKDGPTNNVRPVYPVLELANISS |
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