Gene
| Gene Model ID | pfu_aug2.0_549.1_30899 |
|---|---|
| Locus | scaffold549.1 : 66426 ... 87600 : + |
| To GenomeBrowser | scaffold549.1:66426..87600 |
| Genes list of scaffold | scaffold549.1 |
| Synonym | pfu_aug1.0_8905.1_67944 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_549.1_30899.t2 | 2 | 1 | Acyl-CoA_dh_N | 113 | 222 | 1.8e-20 | 73.5 | 2.0e-23 | 7.6e-20 | 71.5 |
| pfu_aug2.0_549.1_30899.t2 | 1 | 1 | Acyl-CoA_dh_M | 227 | 279 | 2.6e-20 | 71.6 | 1.3e-23 | 4.8e-20 | 70.8 |
| pfu_aug2.0_549.1_30899.t2 | 3 | 1 | Acyl-CoA_dh_1 | 341 | 402 | 3.3e-33 | 114.9 | 3.2e-16 | 1.2e-12 | 48.1 |
| pfu_aug2.0_549.1_30899.t2 | 3 | 1 | Acyl-CoA_dh_2 | 357 | 401 | 4.1e-07 | 30.3 | 0.0038 | 14.0 | 5.9 |
| pfu_aug2.0_549.1_30899.t2 | 3 | 2 | Acyl-CoA_dh_2 | 398 | 450 | 4.1e-07 | 30.3 | 2.6e-07 | 0.00096 | 19.4 |
| pfu_aug2.0_549.1_30899.t2 | 2 | 2 | Acyl-CoA_dh_N | 400 | 416 | 1.8e-20 | 73.5 | 1.3 | 5000.0 | -2.0 |
| pfu_aug2.0_549.1_30899.t2 | 3 | 2 | Acyl-CoA_dh_1 | 403 | 458 | 3.3e-33 | 114.9 | 7.9e-18 | 2.9e-14 | 53.4 |
| pfu_aug2.0_549.1_30899.t2 | 3 | 3 | Acyl-CoA_dh_2 | 539 | 586 | 4.1e-07 | 30.3 | 0.018 | 67.0 | 3.7 |
| pfu_aug2.0_549.1_30899.t2 | 3 | 3 | Acyl-CoA_dh_1 | 541 | 602 | 3.3e-33 | 114.9 | 7.9e-06 | 0.029 | 14.4 |
Transcript
| Transcript ID | pfu_aug2.0_549.1_30899.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_549.1_30899.t1 atgtctggtttccctattacgtcacagtgctcgttcaacaaccctttcgtaactcctttgatagagatcgtcaacatcac tccgaaaatgctgcgagttccccttcttctacgaaatactgcaacagtacgagcagttagtccattcttaagtcaacatc gctatgctacagctgaagcacaagcccaagagcctggtcaaaatgtcaaagccagtaaagccaaaagccaaccagaacca gtcaaggagtcagtttcatttgccaagaacttattcagaggcacaatcaaggcagaccaagtattccctttccctgaggg tatagttctagatgatgaacagacagaaatgcttcaaatgttggtggatccttgtgcaaaattctttgaggagcagaatg atgccctaaagaatgactccctagagaaggtagaggaccatgtaatggagggactgaaggagatgggggcattcggactt caggtgccacaggaacatggaggacttggtttgaataacactcagtatgccagactagtggagatcgtaggatcacatga tctaggagttggtatcacgcttggcgcacatcagtccattggattcaaaggcatcttgttatctggaaatcccgagcaga aagccaagtatttgccagatcttgcctgcggcaaaaaaatggcagcattttgtctcactgaaccagcaagtggctctgat gctagttctataaagaccagagctgtaccatcagctgatggtaaacattacactttaaatggaagcaagatttggatcag taatggagggctagcagaagtcttcacagtttttgctaagacaccagtaaagaatgaaaccaccggagaaaccaaggata agattactgctttcatcgtagaacgttcctttggtggagtgtccaatggtccaccagagaagaagatgggaattaaggct tctaacacagcggaagtttattttgaggactgtaaagttccagctgaaaatgttctcggaggtataggaaatggtttcaa agtggctatgcacattttaaacaatggtagatttgggatggcagcagctctgtctggaactatgtcatattgtataagaa aagcagtagatcatgcttcagagaggaatcagtttggagataagattgctaactacggagccatacaggagaagatagcc cgtatggtcactgcacagtatgtcactgaggaagcagcctggttctgtgctgatgaagccatccaggtgacaggaggtat gggatacatgagggactgcggacttgagagagtgatgagagaccttagaatctttcgtattttcgagggaacaaatgaca tcctcaggatctttatagcccttactgggattcagtatgcgggaaaatatctacaagaagtacagaaagcgatgaagaac cctgtaggcaacatgagtgtactgatggatatgaccagtaaacgggcaaagagagcattaggagccagtctaggtcagtc actgactaaagatgtacacaaggatctacatacctcagcagaccagactgtaaaggccattgagaactttggaggaacta tagaggatctgttgataaaacacaagaagaacattcaacatgaacagttcatactgaaacggttggcagactcagctatc gatatatttgggatggtgtctgtattgtctagagcctcaaggacattaaatcaaggccagcctactgctgaacatgaaac caatatatgtcaagttttctgtgatgaggcatcagagagaattgccgccaacctcaaagccacaaagtcctcagattcca caaagatcttcaaacaattgtccggtatatcgaaagatgtggtgaccaatggtggctcccttcagcggcatcctctcgga ttctga |
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| Transcript ID | pfu_aug2.0_549.1_30899.t2 |
| Definition | - |
>pfu_aug2.0_549.1_30899.t2 atgtctggtttccctattacgtcacagtgctcgttcaacaaccctttcgtaactcctttgatagagatcgtcaacatcac tccgaaaatgctgcgagttccccttcttctacgaaatactgcaacagtacgagcagttagtccattcttaagtcaacatc gctatgctacagctgaagcacaagcccaagagcctggtcaaaatgtcaaagccagtaaagccaaaagccaaccagaacca gtcaaggagtcagtttcatttgccaagaacttattcagaggcacaatcaaggcagaccaagtattccctttccctgaggt tctagatgatgaacagacagaaatgcttcaaatgttggtggatccttgtgcaaaattctttgaggagcagaatgatgccc taaagaatgactccctagagaaggtagaggaccatgtaatggagggactgaaggagatgggggcattcggacttcaggtg ccacaggaacatggaggacttggtttgaataacactcagtatgccagactagtggagatcgtaggatcacatgatctagg agttggtatcacgcttggcgcacatcagtccattggattcaaaggcatcttgttatctggaaatcccgagcagaaagcca agtatttgccagatcttgcctgcggcaaaaaaatggcagcattttgtctcactgaaccagcaagtggctctgatgctagt tctataaagaccagagctgtaccatcagctgatggtaaacattacactttaaatggaagcaagatttggatcagtaatgg agggctagcagaagtcttcacagtttttgctaagacaccagtaaagaatgaaaccaccggagaaaccaaggataagatta ctgctttcatcgtagaacgttcctttggtggagtgtccaatggtccaccagagaagaagatgggaattaaggcttctaac acagcggaagtttattttgaggactgtaaagttccagctgaaaatgttctcggaggtataggaaatggtttcaaagtggc tatgcacattttaaacaatggtagatttgggatggcagcagctctgtctggaactatgtcatattgtataagaaaagcag tagatcatgcttcagagaggaatcagtttggagataagattgctaactacggagccatacaggagaagatagcccgtatg gtcactgcacagtatgtcactgaggaagcagcctggttctgtgctgatgaagccatccaggtgacaggaggtatgggata catgagggactgcggacttgagagagtgatgagagaccttagaatctttcgtattttcgagggaacaaatgacatcctca ggatctttatagcccttactgggattcagtatgcgggaaaatatctacaagaagtacagaaagcgatgaagaaccctgta ggcaacatgagtgtactgatggatatgaccagtaaacgggcaaagagagcattaggagccagtctaggtcagtcactgac taaagatgtacacaaggatctacatacctcagcagaccagactgtaaaggccattgagaactttggaggaactatagagg atctgttgataaaacacaagaagaacattcaacatgaacagttcatactgaaacggttggcagactcagctatcgatata tttgggatggtgtctgtattgtctagagcctcaaggacattaaatcaaggccagcctactgctgaacatgaaaccaatat atgtcaagttttctgtgatgaggcatcagagagaattgccgccaacctcaaagccacaaagtcctcagattccacaaaga tcttcaaacaattgtccggtatatcgaaagatgtggtgaccaatggtggctcccttcagcggcatcctctcggattctga |
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Protein
| Protein ID | pfu_aug2.0_549.1_30899.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_549.1_30899.t1 MSGFPITSQCSFNNPFVTPLIEIVNITPKMLRVPLLLRNTATVRAVSPFLSQHRYATAEAQAQEPGQNVKASKAKSQPEP VKESVSFAKNLFRGTIKADQVFPFPEGIVLDDEQTEMLQMLVDPCAKFFEEQNDALKNDSLEKVEDHVMEGLKEMGAFGL QVPQEHGGLGLNNTQYARLVEIVGSHDLGVGITLGAHQSIGFKGILLSGNPEQKAKYLPDLACGKKMAAFCLTEPASGSD ASSIKTRAVPSADGKHYTLNGSKIWISNGGLAEVFTVFAKTPVKNETTGETKDKITAFIVERSFGGVSNGPPEKKMGIKA SNTAEVYFEDCKVPAENVLGGIGNGFKVAMHILNNGRFGMAAALSGTMSYCIRKAVDHASERNQFGDKIANYGAIQEKIA RMVTAQYVTEEAAWFCADEAIQVTGGMGYMRDCGLERVMRDLRIFRIFEGTNDILRIFIALTGIQYAGKYLQEVQKAMKN PVGNMSVLMDMTSKRAKRALGASLGQSLTKDVHKDLHTSADQTVKAIENFGGTIEDLLIKHKKNIQHEQFILKRLADSAI DIFGMVSVLSRASRTLNQGQPTAEHETNICQVFCDEASERIAANLKATKSSDSTKIFKQLSGISKDVVTNGGSLQRHPLG F |
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| Protein ID | pfu_aug2.0_549.1_30899.t2 |
| Definition | - |
>pfu_aug2.0_549.1_30899.t2 MSGFPITSQCSFNNPFVTPLIEIVNITPKMLRVPLLLRNTATVRAVSPFLSQHRYATAEAQAQEPGQNVKASKAKSQPEP VKESVSFAKNLFRGTIKADQVFPFPEVLDDEQTEMLQMLVDPCAKFFEEQNDALKNDSLEKVEDHVMEGLKEMGAFGLQV PQEHGGLGLNNTQYARLVEIVGSHDLGVGITLGAHQSIGFKGILLSGNPEQKAKYLPDLACGKKMAAFCLTEPASGSDAS SIKTRAVPSADGKHYTLNGSKIWISNGGLAEVFTVFAKTPVKNETTGETKDKITAFIVERSFGGVSNGPPEKKMGIKASN TAEVYFEDCKVPAENVLGGIGNGFKVAMHILNNGRFGMAAALSGTMSYCIRKAVDHASERNQFGDKIANYGAIQEKIARM VTAQYVTEEAAWFCADEAIQVTGGMGYMRDCGLERVMRDLRIFRIFEGTNDILRIFIALTGIQYAGKYLQEVQKAMKNPV GNMSVLMDMTSKRAKRALGASLGQSLTKDVHKDLHTSADQTVKAIENFGGTIEDLLIKHKKNIQHEQFILKRLADSAIDI FGMVSVLSRASRTLNQGQPTAEHETNICQVFCDEASERIAANLKATKSSDSTKIFKQLSGISKDVVTNGGSLQRHPLGF |
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