Gene
| Gene Model ID | pfu_aug2.0_549.1_30900 |
|---|---|
| Locus | scaffold549.1 : 87651 ... 94745 : - |
| To GenomeBrowser | scaffold549.1:87651..94745 |
| Genes list of scaffold | scaffold549.1 |
| Synonym | pfu_aug1.0_52553.1_41549 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_549.1_30900.t1 | 1 | 1 | Peptidase_M10 | 64 | 219 | 1.7e-39 | 135.0 | 1.10002e-42 | 2.3e-39 | 134.5 |
| pfu_aug2.0_549.1_30900.t1 | 3 | 1 | Hemopexin | 304 | 339 | 1.3e-18 | 66.4 | 1.6e-11 | 3.3e-08 | 33.1 |
| pfu_aug2.0_549.1_30900.t1 | 3 | 2 | Hemopexin | 379 | 397 | 1.3e-18 | 66.4 | 0.011 | 23.0 | 4.8 |
| pfu_aug2.0_549.1_30900.t1 | 3 | 3 | Hemopexin | 400 | 435 | 1.3e-18 | 66.4 | 5.0e-10 | 1.1e-06 | 28.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_549.1_30900.t1 | gi|327277063|ref|XP_003223285.1| | PREDICTED: matrix metalloproteinase-19 [Anolis carolinensis] | 4.06377e-44 |
| pfu_aug2.0_549.1_30900.t1 | gi|734606467|ref|XP_010730378.1| | PREDICTED: matrix metalloproteinase-19 [Larimichthys crocea] | 8.99634e-43 |
| pfu_aug2.0_549.1_30900.t1 | gi|725595559|ref|XP_010348239.1| | PREDICTED: matrix metalloproteinase-19 [Saimiri boliviensis boliviensis] | 1.00053e-42 |
| pfu_aug2.0_549.1_30900.t1 | gi|558199814|ref|XP_006131244.1| | PREDICTED: matrix metalloproteinase-19 [Pelodiscus sinensis] | 1.99965e-42 |
Transcript
| Transcript ID | pfu_aug2.0_549.1_30900.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_549.1_30900.t1 atgagattcctagaaatttatttgcagtgtgacaaaatgtcattacgggtcattggcgtttggctcatgtggtttgaagc tgtttttcaattgcagtttattccttacagatctacctacagcgatatggatacatggaaaccttccatggaagtgcaac tcgcagagacttcaagagggcaatgcgagagatggaaatataatttgctaagatggggagtgtcatcattttcaatgaaa cttcgaccgtttctccaatggaaagcatttcaaatggcgtttggtttctggtctcgacatgcaccactacgattcaagta ccgtaagaagaatccagatataaatatattgtttgctaaaggagagcatggtgatggctactataatgccttcgatggaa agggtcagattctcgcccatgctttcgctccaacatcaggtgagacccattttgacgacgcagagccctggaccctcagt aatgaccccacccaaggcatcaacctcctgtacgtatctgtacacgagttcggccacgcccttggattagaccacgtgat ggaccgtgacgcagtcatgtcgccccacaccagtaccaaagtcaagtttgataagctccatcctcatgaacgagaacaac ttgagagattgtacggtactaaagaatatccacgagtaaaatcacgacagacatacaagcgacgccggagacgttatggt caacctcccgtggtcaacgtaagccacatagaaaacccctgcaggcaaatagacgacttatttctagatagatacgggta tgctaatgttttatcagggaaaatcttatttaatgtgagaaagtcgggacagagaagacatacccctaactatgtacgag ctaggtatgctggagccccctaccactcagatgcggttgctaacataccagaacttaacagagtttacttctttaagggc agctatgtatggagggtaacacatcatagagttgacaaggaatttcccaaacttgtaccattccatagaaaacatggggc accaagagcagcattgaccttgacctcagggaaacgcactactatctttctttttggggtgacaacattctgggaatgga acattgatcgagacacagcatcaggctctacccccatgctgattaatagattctggccagatttaccacacgctcctgat gcagccattatgtgggaagaccgatatctatatttcatcaaagatgacaaatattataaaatcaacccattaaagaggag aacagagaaaggctacccaaaacagatgcccccaccttggttagccccactgtgtccaaagccaagaagactaaagaaat aa |
|
Protein
| Protein ID | pfu_aug2.0_549.1_30900.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_549.1_30900.t1 MRFLEIYLQCDKMSLRVIGVWLMWFEAVFQLQFIPYRSTYSDMDTWKPSMEVQLAETSRGQCERWKYNLLRWGVSSFSMK LRPFLQWKAFQMAFGFWSRHAPLRFKYRKKNPDINILFAKGEHGDGYYNAFDGKGQILAHAFAPTSGETHFDDAEPWTLS NDPTQGINLLYVSVHEFGHALGLDHVMDRDAVMSPHTSTKVKFDKLHPHEREQLERLYGTKEYPRVKSRQTYKRRRRRYG QPPVVNVSHIENPCRQIDDLFLDRYGYANVLSGKILFNVRKSGQRRHTPNYVRARYAGAPYHSDAVANIPELNRVYFFKG SYVWRVTHHRVDKEFPKLVPFHRKHGAPRAALTLTSGKRTTIFLFGVTTFWEWNIDRDTASGSTPMLINRFWPDLPHAPD AAIMWEDRYLYFIKDDKYYKINPLKRRTEKGYPKQMPPPWLAPLCPKPRRLKK |
|