Gene
| Gene Model ID | pfu_aug2.0_549.1_30905 |
|---|---|
| Locus | scaffold549.1 : 155865 ... 181905 : - |
| To GenomeBrowser | scaffold549.1:155865..181905 |
| Genes list of scaffold | scaffold549.1 |
| Synonym | pfu_aug1.0_1691.1_58639 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_549.1_30905.t1 | 1 | 1 | Med12 | 74 | 127 | 1.1e-15 | 57.3 | 4.1e-19 | 3.0e-15 | 55.9 |
| pfu_aug2.0_549.1_30905.t1 | 5 | 1 | Med12-LCEWAV | 250 | 323 | 0.0 | 236.7 | 1.1e-11 | 7.9e-08 | 31.2 |
| pfu_aug2.0_549.1_30905.t1 | 5 | 2 | Med12-LCEWAV | 323 | 493 | 0.0 | 236.7 | 0.0 | 0.0 | 188.2 |
| pfu_aug2.0_549.1_30905.t1 | 5 | 3 | Med12-LCEWAV | 507 | 584 | 0.0 | 236.7 | 4.6e-12 | 3.4e-08 | 32.4 |
| pfu_aug2.0_549.1_30905.t1 | 5 | 4 | Med12-LCEWAV | 613 | 650 | 0.0 | 236.7 | 0.21 | 1500.0 | -2.8 |
| pfu_aug2.0_549.1_30905.t1 | 5 | 5 | Med12-LCEWAV | 1984 | 2011 | 0.0 | 236.7 | 0.24 | 1800.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_549.1_30905.t1 | gi|637276555|ref|XP_008104379.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X4 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_549.1_30905.t1 | gi|530586459|ref|XP_005286992.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X5 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_549.1_30905.t1 | gi|641801040|ref|XP_008163291.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X6 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_549.1_30905.t1 | gi|612047592|ref|XP_007502102.1| | PREDICTED: mediator complex subunit 12-like isoform X8 [Monodelphis domestica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_549.1_30905.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_549.1_30905.t1 atgatagatgaattgacagccactagtgtgaagcatggctttaacaataatccatccatacacgatgagcatggatcagc cagaaatcagaacatcaaccaagaaaagtttggtacagaatttatatcagtgctcaacaagaagcaagaaatcaacacct tccaggatactacaaagaaaaaacaacagccaactaaggactatttctggccggcggcaaagaatcagaatgcaatgcgg gcatggttcaaagacttagctggtaataagccattgtcatcacttggtaaaaaggtaccgaccttcaacaagaaggaaga gattttctctacactctgtgaatactcagtaccaatggtgaaggcggcgtggtttataaagatgactacagcttacaacg tggctatgcaggaaaataaaacaaagcagagaagacaaatcattgatcagtctgttgagtggtgtcaagccataacaaag tacctgaaggaccagttacagaagattcaggagcccctgggaggggcaggtgccacgtctagcttccttaccgtgtctca gccagaccccaaccaggccctcaaacagtggcactatgtcactaaattagcccaccacatgtatgatgaaggtttggtag acagacatgagtttttgagctggttgattgacatgctggagaagatgaaacaaagtgaagacacggtgctcaaacttctc ctgaaccaagttttactttacttagaggagattacgctgtccacattactatccagaaagcttgcacatttttcttgtaa gaaactctcacagatgattaatgatgcggactgtgcaccaccgagaacagagtctcccatgctgactaatggaggaactg ggataagcagtaaccagttgatgccccagaatccactactagcagtgtttgcccagtatactaactgtccccagcacaga ggagtgatccgtacccacattcgtacaatggagcatcagatttgtcaccgagggagggcagcagaggtccgctggtcgtc agataaatgtcaacaatcctccaagggtttcaccatcagtaagattttggaggttttggacacgctggatcgtcataact ttgagagggtcgacacaaacaatacactggatactttatacaataaaatctttgccaacaatcctaacaaagagggatct gagccatttgttagtgatgagcccattatacatctgctgatagactgggctgtgagcacacggcgctgtggtaactatag agccgtagtcgtggctaaactcctagaaaaacgacagaatgaacttaggaatgagaagtttggtgagagggaggtaacag aagaacaaagagagaacatggacacgggtcaaactgtacatcagggtgatcctgtcttccaaaattatttgatgaactat ctggacacacaagcgccctctgtggagcctcaggatgattttaaagaggtgatggaccttcagattggattggagagtga cctgggaactctatttggctctgtcaaagatgagcagaagccaagcccggaacaacctgcttctgtaaagtctataaagt cagaaaaggaccagaacataccgagtgtacagcccaaccatgaggtcccttccacacccaaaggtccctcccgacacatg ctgtatgcccaacacttcccaatcccccaggaggagtcaggacacgagtgtaatcagaggatggtggtactgtacggagt ggggaaggccagggatgacgcacatcaagtcattaagaagatagaaaaatcagccctcaaaatgttccacaaacggaaat gtattgacactagcagtgctgatgccaccatgtcgaagcccaaacaaaataatgaagccaaatttgagagtgttttcagc aagtttcagaagctgtcgtaccatgaccagtattatgtgaccactcagtgtaagaatgtggtattggaccatatagggaa cttcctggctggtagctctacttacataccctatgtggaaaacgtctcctatctctttgacatgatggaatactccctga atatttatggtttattggatttttctgttcagttactgaaggacctaagtaatgtagaggagatgctgagtgaacagaac tccagtctttgtggtagttataccacgtcactctgtctctgtatcgttggaatattcagaaagtaccactcctatctact ggtctcacaagatcttactatcatggcatttgaagggttaataggtgtagttaagaaagtgtgtaatccttcagactgtt cttcatcagagaggtgtatactggcctatctatatgatgcttatacctcatgtagttatcttagggagaagttccaggat atgtttagtaatgcatacaggaagatgaagatgacgttatacgccaccattacaccatcggcatctaacaaactatggga tccaagcttcatggttgattgccttaataacatcaatatcaaggcacccctggataacaacttgataaaacagctgaatg acaaccctgccaataggtacagctttgtctgtaatgccatgctcaggatctgccactgtaactcactacatatagaaaaa ttaaatgagatgtcaatactatgtgctgagttaacggctcgttgtaatgccctgagttctgagtggctgggagttctaca ggcattatgttgttcctccaatcatcattgtggattcatcgacatccttactcagattgacgtgagtgacatgtcaatcc atgactcgttagctgttttcaccgcaattctgatagcacgtcactgtttctcactacaagacttggtggtacatgtagtt ctaccttccctgctcatggccaggccttctgcacaaggggaccaggatgctgagccaggggccagactgacctgtcatat actcctacgtttgttcaagacctccgacatggttctaacatcacctggtccaggtgtcagcaccaagaacacatgtaaca tcaaggggtcatgtgacaagcacctgctggacgctgcccatgatagtatcggtgtgggcccggtgttggcgatactgaaa gccatgctggtcctaagtgacttgtgtagtgatgaaatgaagtataagtcagggtccagcagtcgtaaggacgataaaga gggcgatatcgtcagtatgctactgaaccatgttaacagtgtggaggatgacggagaaatggatatgataatgggcacct ccaaacataaacaagggatagagaatgctggtttaagtgagtttgccaagcatgccctgagggagatgtgtagacaagac tgggtacaggagaagttccttaaagaccctgaaagtgtattaaatattgaccttctattagatactatgctatcaaacaa gcaggcccagcagctgttacagatgatatgttatcctaatggtgtgcctaaccaggtggagggctcagaaccagatataa agcagcaggtacagaggatcctacaaacactagacctttggagcttccgtgtcacactgctggaactacaactcatgttc aaacaagctggcactcagtctgaaactaatgtattactggataacattgccagagccactatagagctgttccacagaca gacagagggtggtcgtatagcaggggagagggagggcatccctccaagagatggagaaagatgcagtatggatggtcagt ccactaatcaacaagctgccgagtcaagtccaagggagagtactcaaactatcagggagtgtgttagagtgtgggagcag tgtgttgtcaaagggacgggaaaaggaaaaaagtcagagaaggacaagacacccgatgaatttaaagtgagggcaaatat ccatgaagctttaagtttaaggttatctttggttggtggtatgttcgacacaatacagagaaattacacaacagaatggg ccatattactcctccagctggtaacaaacggtattgtggatgtccagtctaatggagagttatttacgatcctgttagac atgatgtgtgtacttattcatggttcactgatacctgagggaacagacaaaggagaggagaataccaaggcctatatgac attgataaagaaacttaggagagaacttggggacaagcagtcagactctattgataaaatccgacagttacttcccttgc caaagaaattttttgaagtcataagctgcgaaacctacggcacacaaatggacagcaaaggaaacaaatatgatggattt gggaaaaaacagggatttcaagttgctaaaaaggagaagataagtccatgggaggtgatagaaggatcaaagaacccccc acccctatcctggccatactttggagccgtcaaattggagaagaaacctcttaaatatgaagaacaacataggttgctac tacatcatacccacagtctacgtcagtctctcagccattaccttgatcaacctgtactcccacctgaggaactggaacca ccacaagaaaaacatgaggataaacccaaggagaatgctgatacacaggtgcaggaggctgcaaagagaaagacaaaacc cagcaagaaaaataaacgatcaagtagcggcagtggaacatacatacagagagaacttggggacaagcagtcagactcta ttgataaaatccgacagttacttcccttgccaaagaaattctttgaagtcataagctgtgaaacgtacggcacacaaatg gacagcaaaggaaacaagtatgatggatttgggaaaaaacagggatttcaagttgctaaaaaggagaagataagtccatg ggaggtgatagaaggatcaaagaaccccccacccctatcctggccatactttggagccgtcaaattagagaagaaacctc ttaaatatgaagaacaacatagattgttactacatcatacccacagtctacgtcagtctctcagccattaccttgatcag cctgtactcccacctgaggaactagaaccaccacaagaaaaacatgaggataaacccaaggagagtgctgatacacaggt acaggaggctgcaaaaagaaagacgaaacccagcaagaaaaataaacgatcaagtagcggcagtggaacatacatacagg cacctcagaggtacaacccgtccccctggggatatcctcccagtcaacctcctcaacatggtgcttactcctcatacaat cctctctctacagggccgtcccagggaccaaggtttgaatctccaccttacatgcccatgaatcccaaggtcgctataca gaacatgattcgcacacgtcacccaggtaacatgcaaaactggaactcaagtcaaaacaatccatcaactcttgccatga tacaaaaaacaaacatgcagaggatggtacgtcaacagctacgtcagcagtttcagaatcgaccaatgccagatcagggt gtgtttacaggaggcagtatgcagcctccaggaatgcacggcatgtcacaacctcctggtatgtcccagaattatggccc atcatataacatatcccaacagtccagtatggatggcatgccccctagtggtggaggtatgataagtcagggttataacc aatcatacccagcaggccagaacccgggcatgatgcagcccatgaacagtggcccgggctatatgtcacaacaacccaca caacaacatttcaatcctagctctggaaggatgatgcattctggtggagggatacagacaagtaacacaatgagtgggat gtcaggagggacgagttataatcagatgggaccctcaggacccccaccccaaggctcgtacatgcagaacatcaacccta acatgcaaaatcaacaacaacaacacctgttacaacaacaaaaactgatacaaatgaggcgtcagacaatggcacagcaa caacaacaacagcaacctatgtcacagcaacgtgctgccatgatggcacaactccagcaacaaatgccacaacctaaccc caaccagtacaataactaccctaatcagccctctcagtactag |
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Protein
| Protein ID | pfu_aug2.0_549.1_30905.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_549.1_30905.t1 MIDELTATSVKHGFNNNPSIHDEHGSARNQNINQEKFGTEFISVLNKKQEINTFQDTTKKKQQPTKDYFWPAAKNQNAMR AWFKDLAGNKPLSSLGKKVPTFNKKEEIFSTLCEYSVPMVKAAWFIKMTTAYNVAMQENKTKQRRQIIDQSVEWCQAITK YLKDQLQKIQEPLGGAGATSSFLTVSQPDPNQALKQWHYVTKLAHHMYDEGLVDRHEFLSWLIDMLEKMKQSEDTVLKLL LNQVLLYLEEITLSTLLSRKLAHFSCKKLSQMINDADCAPPRTESPMLTNGGTGISSNQLMPQNPLLAVFAQYTNCPQHR GVIRTHIRTMEHQICHRGRAAEVRWSSDKCQQSSKGFTISKILEVLDTLDRHNFERVDTNNTLDTLYNKIFANNPNKEGS EPFVSDEPIIHLLIDWAVSTRRCGNYRAVVVAKLLEKRQNELRNEKFGEREVTEEQRENMDTGQTVHQGDPVFQNYLMNY LDTQAPSVEPQDDFKEVMDLQIGLESDLGTLFGSVKDEQKPSPEQPASVKSIKSEKDQNIPSVQPNHEVPSTPKGPSRHM LYAQHFPIPQEESGHECNQRMVVLYGVGKARDDAHQVIKKIEKSALKMFHKRKCIDTSSADATMSKPKQNNEAKFESVFS KFQKLSYHDQYYVTTQCKNVVLDHIGNFLAGSSTYIPYVENVSYLFDMMEYSLNIYGLLDFSVQLLKDLSNVEEMLSEQN SSLCGSYTTSLCLCIVGIFRKYHSYLLVSQDLTIMAFEGLIGVVKKVCNPSDCSSSERCILAYLYDAYTSCSYLREKFQD MFSNAYRKMKMTLYATITPSASNKLWDPSFMVDCLNNINIKAPLDNNLIKQLNDNPANRYSFVCNAMLRICHCNSLHIEK LNEMSILCAELTARCNALSSEWLGVLQALCCSSNHHCGFIDILTQIDVSDMSIHDSLAVFTAILIARHCFSLQDLVVHVV LPSLLMARPSAQGDQDAEPGARLTCHILLRLFKTSDMVLTSPGPGVSTKNTCNIKGSCDKHLLDAAHDSIGVGPVLAILK AMLVLSDLCSDEMKYKSGSSSRKDDKEGDIVSMLLNHVNSVEDDGEMDMIMGTSKHKQGIENAGLSEFAKHALREMCRQD WVQEKFLKDPESVLNIDLLLDTMLSNKQAQQLLQMICYPNGVPNQVEGSEPDIKQQVQRILQTLDLWSFRVTLLELQLMF KQAGTQSETNVLLDNIARATIELFHRQTEGGRIAGEREGIPPRDGERCSMDGQSTNQQAAESSPRESTQTIRECVRVWEQ CVVKGTGKGKKSEKDKTPDEFKVRANIHEALSLRLSLVGGMFDTIQRNYTTEWAILLLQLVTNGIVDVQSNGELFTILLD MMCVLIHGSLIPEGTDKGEENTKAYMTLIKKLRRELGDKQSDSIDKIRQLLPLPKKFFEVISCETYGTQMDSKGNKYDGF GKKQGFQVAKKEKISPWEVIEGSKNPPPLSWPYFGAVKLEKKPLKYEEQHRLLLHHTHSLRQSLSHYLDQPVLPPEELEP PQEKHEDKPKENADTQVQEAAKRKTKPSKKNKRSSSGSGTYIQRELGDKQSDSIDKIRQLLPLPKKFFEVISCETYGTQM DSKGNKYDGFGKKQGFQVAKKEKISPWEVIEGSKNPPPLSWPYFGAVKLEKKPLKYEEQHRLLLHHTHSLRQSLSHYLDQ PVLPPEELEPPQEKHEDKPKESADTQVQEAAKRKTKPSKKNKRSSSGSGTYIQAPQRYNPSPWGYPPSQPPQHGAYSSYN PLSTGPSQGPRFESPPYMPMNPKVAIQNMIRTRHPGNMQNWNSSQNNPSTLAMIQKTNMQRMVRQQLRQQFQNRPMPDQG VFTGGSMQPPGMHGMSQPPGMSQNYGPSYNISQQSSMDGMPPSGGGMISQGYNQSYPAGQNPGMMQPMNSGPGYMSQQPT QQHFNPSSGRMMHSGGGIQTSNTMSGMSGGTSYNQMGPSGPPPQGSYMQNINPNMQNQQQQHLLQQQKLIQMRRQTMAQQ QQQQQPMSQQRAAMMAQLQQQMPQPNPNQYNNYPNQPSQY |
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