Gene
| Gene Model ID | pfu_aug2.0_549.1_30907 |
|---|---|
| Locus | scaffold549.1 : 205085 ... 221346 : + |
| To GenomeBrowser | scaffold549.1:205085..221346 |
| Genes list of scaffold | scaffold549.1 |
| Synonym | pfu_aug1.0_1691.1_58642 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_549.1_30907.t1 | 3 | 1 | TIR | 14 | 109 | 2.5e-20 | 72.3 | 2.2e-19 | 8.1e-16 | 57.7 |
| pfu_aug2.0_549.1_30907.t1 | 3 | 1 | TIR_2 | 14 | 117 | 3.2e-17 | 62.5 | 5.7e-16 | 2.1e-12 | 47.0 |
| pfu_aug2.0_549.1_30907.t1 | 2 | 1 | TMEM173 | 147 | 335 | 0.0 | 201.2 | 7.6e-34 | 2.8e-30 | 105.1 |
| pfu_aug2.0_549.1_30907.t1 | 3 | 2 | TIR | 283 | 310 | 2.5e-20 | 72.3 | 0.9 | 3300.0 | -2.6 |
| pfu_aug2.0_549.1_30907.t1 | 3 | 3 | TIR | 376 | 464 | 2.5e-20 | 72.3 | 2.9e-05 | 0.11 | 11.9 |
| pfu_aug2.0_549.1_30907.t1 | 3 | 2 | TIR_2 | 420 | 485 | 3.2e-17 | 62.5 | 3.8e-05 | 0.14 | 12.3 |
| pfu_aug2.0_549.1_30907.t1 | 2 | 2 | TMEM173 | 513 | 699 | 0.0 | 201.2 | 2.4e-30 | 8.9e-27 | 93.6 |
| pfu_aug2.0_549.1_30907.t1 | 3 | 3 | TIR_2 | 650 | 670 | 3.2e-17 | 62.5 | 2.4 | 8900.0 | -3.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_549.1_30907.t1 | gi|551519369|ref|XP_005811180.1| | PREDICTED: stimulator of interferon genes protein-like [Xiphophorus maculatus] | 6.0e-13 |
| pfu_aug2.0_549.1_30907.t1 | gi|523704440|ref|NP_001265766.1| | stimulator of interferon genes protein [Danio rerio] | 2.0e-12 |
| pfu_aug2.0_549.1_30907.t1 | gi|528499322|ref|XP_005157178.1| | PREDICTED: stimulator of interferon genes protein isoform X1 [Danio rerio] | 6.0e-12 |
| pfu_aug2.0_549.1_30907.t1 | gi|297676123|ref|XP_002815998.1| | PREDICTED: stimulator of interferon genes protein [Pongo abelii] | 8.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_549.1_30907.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_549.1_30907.t1 atggagacaaatgatggagatacagaagaaagtcatgatgtgtttattgtacacagtaacgatgccactgataaaaactt tgctctcagggagttgaaggaaaagctgaacagtaagggagtgaaaactttaacagatgctgaagattttagaagtggca ggccggtcattgagaacataaataaggccatcaaatgctgccgtaaagtacttgtagtaatgacacatagttctgtacag agtccttggtgctcccttgaattgctgctagctttagaaaagtcccagaggaaaaacaaacactctgtaatactactcat tattagttctccagctggcccaccaatgcttcctcgattgggaatatttgattgtgcaccgcgtgtcaacatggatgata tgattttaacaccagaaatccttcaggaaattatcagacacatccaagttgatgttccgttaacaagtagactgcccgct ggaaatttggcccatggtctggtttggtcacacttcactggtctgctacagtatctgctaccagctgaattagaggacaa aatagaacaatcaagcttttaccaggaaaatcccaagaaatttccaaagaagttgtatgagctaatcccagagagctgta attgtcctcctggtaggatggttgaagatgactcgggttgtatcacacaggttggacaactggatcctattgaaatgtac cgtgctggaaattatcgtaagattcagcttaggatttatagcatcaaggaaggaaatgagacctattattgcgtggctga atatccctcttcacttggagtcataaaggaaatggaggggaatgagatggccatggtcaatgcttatgaaagacgtatgc agattggaaggttctactacacaatgcagtctattcttacacatcccaaactagcaaactgtcataacaaagctcaactc cttcttttcaatgaaaagaagacaaacccaagtgaagttcttctggatgcgattaaaatggacctttccatgcaagagga ggatgcatgtattccagcagtcatcactagatttggggtaccattagaccgtctggagtctgtagatcaccagtatgagt atgatgcttacatactttacaatgcagagacacagagttacacgtcaaggcacaatgtttacagtgaaattactgataga cttagggagagaggtctgaagatctatgaggaggcagggggccaatcagaatttgcttcaatagggagatgtagatggtt tatatatatccttaccaaagatgccctacatagtaaaaataatacattgaaaatgctgtcggctctgtcacaaagtgtaa gtgagcaaagggtcaaggttattcctgtattggcggagagagatgtttgttattcggacattccagagtccatcaagtgg gtaacatacatggatccttatcatgataaagactacttggataggctgtgtcatatactgaaaggtgaggatattccttt ttgtgtagagactcatctaccagctggtgatattgcgtatggattggcctgggcatatattatcaactacttggaatatg tactatcaggaaattttccaactcaaattatagaatcgctacagagaacagaccacggatcaggggatgagtatgtgtgt tcaataaagttgtacataattataccccagagttgccggattactaaaaatagactggatcaagtagatggagccgtgtc tcattaccagacctttaaaaatgttgccaaggaccagagtggaagacaaatcagatcatatgactgtgatatgtactgta ttgagaaggatgggaaaaaggtattttttgttgggcagtatgcttcaccagtattgtgtatgtcagagatgaaggacttt aacataggtgggatgaatgaccatgatatcaaagaacaaagctggcagttctgtgtgataacacaaaatatcttggacag tacatcagctaaacagtatagacacctttgtgaacttgtgtggtacaatgatgaaacaacaactttatcagaagagatgt tcagaagaatccagttatcagatgacacagaggaaaccatatatagaagggatgaacatctacaaacagagcactcatga |
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Protein
| Protein ID | pfu_aug2.0_549.1_30907.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_549.1_30907.t1 METNDGDTEESHDVFIVHSNDATDKNFALRELKEKLNSKGVKTLTDAEDFRSGRPVIENINKAIKCCRKVLVVMTHSSVQ SPWCSLELLLALEKSQRKNKHSVILLIISSPAGPPMLPRLGIFDCAPRVNMDDMILTPEILQEIIRHIQVDVPLTSRLPA GNLAHGLVWSHFTGLLQYLLPAELEDKIEQSSFYQENPKKFPKKLYELIPESCNCPPGRMVEDDSGCITQVGQLDPIEMY RAGNYRKIQLRIYSIKEGNETYYCVAEYPSSLGVIKEMEGNEMAMVNAYERRMQIGRFYYTMQSILTHPKLANCHNKAQL LLFNEKKTNPSEVLLDAIKMDLSMQEEDACIPAVITRFGVPLDRLESVDHQYEYDAYILYNAETQSYTSRHNVYSEITDR LRERGLKIYEEAGGQSEFASIGRCRWFIYILTKDALHSKNNTLKMLSALSQSVSEQRVKVIPVLAERDVCYSDIPESIKW VTYMDPYHDKDYLDRLCHILKGEDIPFCVETHLPAGDIAYGLAWAYIINYLEYVLSGNFPTQIIESLQRTDHGSGDEYVC SIKLYIIIPQSCRITKNRLDQVDGAVSHYQTFKNVAKDQSGRQIRSYDCDMYCIEKDGKKVFFVGQYASPVLCMSEMKDF NIGGMNDHDIKEQSWQFCVITQNILDSTSAKQYRHLCELVWYNDETTTLSEEMFRRIQLSDDTEETIYRRDEHLQTEHS |
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