Gene
| Gene Model ID | pfu_aug2.0_55.1_16804 |
|---|---|
| Locus | scaffold55.1 : 49666 ... 59638 : + |
| To GenomeBrowser | scaffold55.1:49666..59638 |
| Genes list of scaffold | scaffold55.1 |
| Synonym | pfu_aug1.0_4953.1_67096 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_55.1_16804.t1 | 1 | 1 | TSP_1 | 39 | 85 | 3.5e-12 | 46.2 | 7.5e-16 | 1.1e-11 | 44.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_55.1_16804.t1 | gi|556957588|ref|XP_005989856.1| | PREDICTED: ADAMTS-like protein 5-like [Latimeria chalumnae] | 5.0e-23 |
| pfu_aug2.0_55.1_16804.t1 | gi|573881411|ref|XP_006628901.1| | PREDICTED: ADAMTS-like protein 5-like [Lepisosteus oculatus] | 3.0e-19 |
| pfu_aug2.0_55.1_16804.t1 | gi|657531854|ref|XP_008302852.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 7 [Stegastes partitus] | 1.0e-18 |
| pfu_aug2.0_55.1_16804.t1 | gi|301605335|ref|XP_002932288.1| | PREDICTED: ADAMTS-like protein 5 [Xenopus (Silurana) tropicalis] | 2.0e-18 |
| pfu_aug2.0_55.1_16804.t1 | gi|512868781|ref|XP_004891791.1| | 3.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_55.1_16804.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_55.1_16804.t1 atgtttgctgtcacccgaggagtccgaccgacattcagagaggacatgtacatgaggtgcccaccgctacgttactggat acttgccttaattctggtccaggtgtcgtctggaagctcgtggggacgatggtctccctgcagtgtgacatgcggcagag gcgttcaaacgaggtcaaaaaattgtgatacaagaagtacccaaggtgaacaatgtgacaagacgcagtataaagtttgt gaagtccaggactgtctgactaaagctgtggactacagaacgctgcaatgccaaaaacacaacagaaagccttttcgggg acgactctaccaatggacaagtctgataaatccatatgccaaatgtggattgtcttgtaaagccctttactacggcttct atgtccagttagagagcagcgtcccaaatggtgtcacatgtgaccctgatggaaagggagagaacttctgtgtggaagga aaatgtctgcttttataa |
|
Protein
| Protein ID | pfu_aug2.0_55.1_16804.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_55.1_16804.t1 MFAVTRGVRPTFREDMYMRCPPLRYWILALILVQVSSGSSWGRWSPCSVTCGRGVQTRSKNCDTRSTQGEQCDKTQYKVC EVQDCLTKAVDYRTLQCQKHNRKPFRGRLYQWTSLINPYAKCGLSCKALYYGFYVQLESSVPNGVTCDPDGKGENFCVEG KCLLL |
|