Gene
| Gene Model ID | pfu_aug2.0_55.1_16805 |
|---|---|
| Locus | scaffold55.1 : 59686 ... 86080 : + |
| To GenomeBrowser | scaffold55.1:59686..86080 |
| Genes list of scaffold | scaffold55.1 |
| Synonym | pfu_aug1.0_343.1_15009 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| thrombospondin type-1 domain-containing protein 4 | GO:0008233 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_55.1_16805.t1 | 1 | 1 | ADAM_spacer1 | 1 | 74 | 2.6e-12 | 46.5 | 5.5e-16 | 4.1e-12 | 45.9 |
| pfu_aug2.0_55.1_16805.t1 | 7 | 1 | TSP_1 | 30 | 42 | 4.6e-24 | 84.2 | 1.6 | 12000.0 | -3.5 |
| pfu_aug2.0_55.1_16805.t1 | 7 | 2 | TSP_1 | 264 | 285 | 4.6e-24 | 84.2 | 4.8e-05 | 0.35 | 11.0 |
| pfu_aug2.0_55.1_16805.t1 | 7 | 3 | TSP_1 | 320 | 375 | 4.6e-24 | 84.2 | 4.5e-10 | 3.4e-06 | 27.0 |
| pfu_aug2.0_55.1_16805.t1 | 7 | 4 | TSP_1 | 381 | 430 | 4.6e-24 | 84.2 | 2.4e-07 | 0.0018 | 18.3 |
| pfu_aug2.0_55.1_16805.t1 | 7 | 5 | TSP_1 | 437 | 488 | 4.6e-24 | 84.2 | 4.1e-06 | 0.03 | 14.4 |
| pfu_aug2.0_55.1_16805.t1 | 7 | 6 | TSP_1 | 495 | 550 | 4.6e-24 | 84.2 | 4.8e-09 | 3.6e-05 | 23.7 |
| pfu_aug2.0_55.1_16805.t1 | 7 | 7 | TSP_1 | 557 | 576 | 4.6e-24 | 84.2 | 8.9e-09 | 6.6e-05 | 22.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_55.1_16805.t1 | gi|676430672|ref|XP_009046003.1| | hypothetical protein LOTGIDRAFT_237756 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_55.1_16805.t1 | gi|676430660|ref|XP_009045999.1| | hypothetical protein LOTGIDRAFT_237754 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_55.1_16805.t1 | gi|676430669|ref|XP_009046002.1| | hypothetical protein LOTGIDRAFT_51613, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_55.1_16805.t1 | gi|734608371|ref|XP_010731436.1| | PREDICTED: thrombospondin type-1 domain-containing protein 4 [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_55.1_16805.t1 | gi|657747583|ref|XP_008309100.1| | PREDICTED: thrombospondin type-1 domain-containing protein 4-like, partial [Cynoglossus semilaevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_55.1_16805.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_55.1_16805.t1 atgagaaaatccgacggaagttacattttcaacgggaacttccggttaagttcccatggcgactacaaaaaggcgggaac aactttcaaatacagacgtaaccaaggtcccggatgtccaggagaatgtgtgcatgctgaaggtccagtaaacaatacga tagatgtactggtgctatcctacagaaggaatcctggaataatatatcaattcacagtcccaaaacacatgtccaaagac gccatgaccagaatcataccgcgtcttcgactgaacggctctagaaacggtcctccgtataaccaacccaccctacagag gaaaaatgacgtcagagtgaatcagatccatccttctaggaattctactgcaaaagacgatataaatgacagaaaaactc agcgagttgcactgagacagagtccagtttacgttccttcacgaacagacactcagtctgcacagagtttgacgctggat gggcgtggtttgtcgtctgccgaccgagcttcctctgcttacgatccgtacaggggttattacgatgtgaatcggtggag aggaagtggagggaaccaaagacaagctctgacagctcagtatggccgtcagtataacaccgcgcgtgctgtaggcgatc agaatggcatcccattggctgttcccctgggcggaagtataaacaccggaaacggaattccactaagtaataacatacca ggatccggtcagcgattatccgcacagaatatacctgatggggttaacttcatatggaaactgtctggattcacagagtg ctcgaggacgtgcggaggaggaatccaacaagcaaaagctgtctgcatgtcacgtgactcgtatatcgtagtcacggacg ataattgtgttccgtcagacaaaccgaagttgcaaactgtaaggtgtaatacgaggatttgtccccctggttggacaact ggtgagtggtcgtcatgtagcgtatcatgtggtcgtggcgtacagagcagagacgtactgtgtaaacaaacagtgtcatc acggcaggagatttcgttaccgtcatcaaggtgtggtagacgggatcgaccggtatcagtacagacatgtaccggaaaac cgtgtgcgtcgtgggaagtgggtgactggaagaagtgctcaacagtgtgtggcaaaggtacgaagtcaagggacgtagtc tgtaaaagtattgacggagttaccgttcctgactcacaatgtctcctttctaaaccaatcaacgaagagttatgtgacat ggggacatgcgcagagggctggttcttcagtaaatggtcatcaaattgtacgacagactgtggacgaggtcactacacga gaactgtgtactgctctgcaaaagacggtaccccattggatgagaagaaatgcaacggctcaagaccacgtgacaggaag ccgtgtaaaaataaacatccatgtggagggtactggttcgaaggtccttggtcgtcgtgttcgagtacttgcggtgaggg caaccagaccagaaatatagtctgtatcaagaaactcggggagaagttgtttgctattgtgggagaggagaattgtgcag gaagggataagccaacaacgactagatcatgtggaaaattaccggcttgtccctcagaatggtttatgacagagtggtct cagtgttcagcatcgtgtggtactggaactaaaaccagaagtataaaantttctttgaccttaaacagtgcgaaaaaaaa aaatgcaacaaaatga |
|
Protein
| Protein ID | pfu_aug2.0_55.1_16805.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_55.1_16805.t1 MRKSDGSYIFNGNFRLSSHGDYKKAGTTFKYRRNQGPGCPGECVHAEGPVNNTIDVLVLSYRRNPGIIYQFTVPKHMSKD AMTRIIPRLRLNGSRNGPPYNQPTLQRKNDVRVNQIHPSRNSTAKDDINDRKTQRVALRQSPVYVPSRTDTQSAQSLTLD GRGLSSADRASSAYDPYRGYYDVNRWRGSGGNQRQALTAQYGRQYNTARAVGDQNGIPLAVPLGGSINTGNGIPLSNNIP GSGQRLSAQNIPDGVNFIWKLSGFTECSRTCGGGIQQAKAVCMSRDSYIVVTDDNCVPSDKPKLQTVRCNTRICPPGWTT GEWSSCSVSCGRGVQSRDVLCKQTVSSRQEISLPSSRCGRRDRPVSVQTCTGKPCASWEVGDWKKCSTVCGKGTKSRDVV CKSIDGVTVPDSQCLLSKPINEELCDMGTCAEGWFFSKWSSNCTTDCGRGHYTRTVYCSAKDGTPLDEKKCNGSRPRDRK PCKNKHPCGGYWFEGPWSSCSSTCGEGNQTRNIVCIKKLGEKLFAIVGEENCAGRDKPTTTRSCGKLPACPSEWFMTEWS QCSASCGTGTKTRSIKXSLTLNSAKKKNATK |
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