Gene
| Gene Model ID | pfu_aug2.0_55.1_16806 |
|---|---|
| Locus | scaffold55.1 : 88996 ... 103843 : + |
| To GenomeBrowser | scaffold55.1:88996..103843 |
| Genes list of scaffold | scaffold55.1 |
| Synonym | pfu_aug1.0_343.1_15008 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_55.1_16806.t1 | 4 | 1 | Sushi | 151 | 205 | 4.5e-34 | 116.5 | 1.2e-10 | 4.5e-07 | 30.1 |
| pfu_aug2.0_55.1_16806.t1 | 4 | 2 | Sushi | 212 | 265 | 4.5e-34 | 116.5 | 7.7e-11 | 2.9e-07 | 30.7 |
| pfu_aug2.0_55.1_16806.t1 | 4 | 3 | Sushi | 275 | 324 | 4.5e-34 | 116.5 | 2.4e-10 | 9.1e-07 | 29.1 |
| pfu_aug2.0_55.1_16806.t1 | 4 | 4 | Sushi | 330 | 383 | 4.5e-34 | 116.5 | 1.1e-13 | 4.1e-10 | 39.8 |
| pfu_aug2.0_55.1_16806.t1 | 1 | 1 | Kringle | 393 | 459 | 5.0e-10 | 39.3 | 1.0e-12 | 3.9e-09 | 36.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_55.1_16806.t1 | gi|699253858|ref|XP_009861248.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like [Ciona intestinalis] | 3.0e-28 |
| pfu_aug2.0_55.1_16806.t1 | gi|260836026|ref|XP_002613008.1| | hypothetical protein BRAFLDRAFT_213302 [Branchiostoma floridae] | 2.0e-27 |
| pfu_aug2.0_55.1_16806.t1 | gi|260836783|ref|XP_002613385.1| | hypothetical protein BRAFLDRAFT_68380 [Branchiostoma floridae] | 3.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_55.1_16806.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_55.1_16806.t1 atgatgatacttgtcttgagtcttgttttcgttgcttttgaagaaattttgtgcatactatttatcgatcctagtctgta ttcgacagagctggatttattcgatagttcatccttgcgaccgtttgtagaaaaagatattgtaggaatcgcccaatgtg ccagaatatgtgttcaccagacctcttgtcagtcagctatttttgacaaagatttgctgtcgtgtctactgatgacgtca cagtattctagcgacccctcaacatctttattgagtgccgacaccgaagacgatgatcagtcatttgcaatatcacagtc ccttattccacaggtattggatccatcaacatgctggaacagggcgtgtccactacgacatagatgtgtggttttgacaa gcggtaaatcccactgcgtcatcagtcattgtgaggtgcgatcattcagtgtggaaaatggtgtcatccaagctacgaac ggatacggtgtcgggtctattattcactacatatgcaacgagggatatgctctaaatggtacatctaatgtaaacaccac agctcagatggcttgcaacgcccaaggtttttgggaaggagaagaaccactatgtgacaaaataataatatactgtgggg ttcctccagttctcgaacatggtcaaatcttacccggtggtaccagagaggatacagttaggacctacgaatgtgatgta ctatactacatgaaaggacctaggaatatcacatgtttatcaagtggagagtggaccaccgttgaaggagtttgcaaact tgaaaatttctgtggatcggtaccatccctgttgaatggcattgtctctgcgggtaatagccgagaggatacaaatagga cgtactcatgtgataccggttactacattgttgggaagaactctgtgacatgtaaaagtgacgggacctggtcggttttg gaagcaacttgtgaacttgaacagttctgtagtactttacccatcctgtcaaatggtgttgtcagtgagggtaataaccg agagggtacagaacggacttacacgtgtaataccggttactacatggatggaggaggcacttctacttgtcaaagcgacg ggacttggtcagcgttagattccacttgtgaagactgtctaccaccaaatgaccccaggggcttaaactacaatggagat ctagcagaaacacaggacggacaaccgtgtggcgattggactatggtcaataagtatcaagatttatggagtcacggaaa caaatgtcggaatccagatggagatgtaaggccatggtgcgctttggatgttcagggaatatcaattatctgggagtact gtgatttacatccttgtccatag |
|
Protein
| Protein ID | pfu_aug2.0_55.1_16806.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_55.1_16806.t1 MMILVLSLVFVAFEEILCILFIDPSLYSTELDLFDSSSLRPFVEKDIVGIAQCARICVHQTSCQSAIFDKDLLSCLLMTS QYSSDPSTSLLSADTEDDDQSFAISQSLIPQVLDPSTCWNRACPLRHRCVVLTSGKSHCVISHCEVRSFSVENGVIQATN GYGVGSIIHYICNEGYALNGTSNVNTTAQMACNAQGFWEGEEPLCDKIIIYCGVPPVLEHGQILPGGTREDTVRTYECDV LYYMKGPRNITCLSSGEWTTVEGVCKLENFCGSVPSLLNGIVSAGNSREDTNRTYSCDTGYYIVGKNSVTCKSDGTWSVL EATCELEQFCSTLPILSNGVVSEGNNREGTERTYTCNTGYYMDGGGTSTCQSDGTWSALDSTCEDCLPPNDPRGLNYNGD LAETQDGQPCGDWTMVNKYQDLWSHGNKCRNPDGDVRPWCALDVQGISIIWEYCDLHPCP |
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