Gene
| Gene Model ID | pfu_aug2.0_550.1_00872 |
|---|---|
| Locus | scaffold550.1 : 87034 ... 92745 : - |
| To GenomeBrowser | scaffold550.1:87034..92745 |
| Genes list of scaffold | scaffold550.1 |
| Synonym | pfu_aug1.0_2054.1_00938 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_550.1_00872.t1 | 1 | 1 | RVT_1 | 143 | 300 | 4.4e-16 | 58.8 | 4.1e-20 | 6.0e-16 | 58.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_550.1_00872.t1 | gi|390342515|ref|XP_001177165.2| | 5.0e-24 | |
| pfu_aug2.0_550.1_00872.t1 | gi|390357435|ref|XP_003728998.1| | PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Strongylocentrotus purpuratus] | 6.0e-23 |
| pfu_aug2.0_550.1_00872.t1 | gi|585682081|ref|XP_006812173.1| | PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like, partial [Saccoglossus kowalevskii] | 9.0e-20 |
| pfu_aug2.0_550.1_00872.t1 | gi|585711378|ref|XP_006824734.1| | PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Saccoglossus kowalevskii] | 8.0e-19 |
| pfu_aug2.0_550.1_00872.t1 | gi|585698773|ref|XP_006822643.1| | PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Saccoglossus kowalevskii] | 4.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_550.1_00872.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_550.1_00872.t1 atgggacaggtccatttccgctttactataagtcctacatcaaccaaacttgtatggatgacgcatctgaggatgcttac tacaatgcatggtccagaggctgcatctgccccacatttcatgctgagtgagcagatactgtcagagaggacaaatggag tatggagtaccagactacctgttatgtacaaagagaaataccaagaagaagccccgcccgatctggaaaagcgcgtcaag cgatggcgggaaattgtccatgtggaagaaaatacagccactggtttagctatactttatcctgccaaggaagctgctgg gccacaggtcaaggtcgtttccatggaacccacacctgctgctgatttctcattgtctgttccagatatcttgaaagctg gtactattacccccgtatataaaaacaagggttgtaaactggatgcaaaaaactacaggggaatcacagtcctaccagtc attgtgaaaattctggaacttatactgcgtgacaggctgcgcaatttcatcaatcaacatcagaatcctcagcaacgtgg atttacttgtggggcttctcccttattttgtgcactgatcatcgaggaatttatccgtgaaacgactggcaaaaaatgca cttcgctcactgcctatttagatgcaaaaacagcctttgacgtggtgtatcacaacagccttcttaggaagttatatcac atggtgatagggggtgtactatggaatattctctgcagcttttatgaacatgcaagcagtgttgtcaaatggatgggtaa cacctcagatgaattcattatagagcagggagtcagacagggtgagatccttagtgctgatttatacaaggtctacataa accaactacttgacagactatactactgcggtttcggtgctaagataggagacatcatatgtaacgctccaacctgcgct gatgatctctcaactcttggtgattctacacagtaa |
|
Protein
| Protein ID | pfu_aug2.0_550.1_00872.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_550.1_00872.t1 MGQVHFRFTISPTSTKLVWMTHLRMLTTMHGPEAASAPHFMLSEQILSERTNGVWSTRLPVMYKEKYQEEAPPDLEKRVK RWREIVHVEENTATGLAILYPAKEAAGPQVKVVSMEPTPAADFSLSVPDILKAGTITPVYKNKGCKLDAKNYRGITVLPV IVKILELILRDRLRNFINQHQNPQQRGFTCGASPLFCALIIEEFIRETTGKKCTSLTAYLDAKTAFDVVYHNSLLRKLYH MVIGGVLWNILCSFYEHASSVVKWMGNTSDEFIIEQGVRQGEILSADLYKVYINQLLDRLYYCGFGAKIGDIICNAPTCA DDLSTLGDSTQ |
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