Gene
| Gene Model ID | pfu_aug2.0_550.1_00875 |
|---|---|
| Locus | scaffold550.1 : 107562 ... 167177 : + |
| To GenomeBrowser | scaffold550.1:107562..167177 |
| Genes list of scaffold | scaffold550.1 |
| Synonym | pfu_aug1.0_7438.1_02444 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_550.1_00875.t1 | 2 | 1 | Tmemb_cc2 | 114 | 178 | 0.0 | 397.0 | 0.93 | 2800.0 | -3.5 |
| pfu_aug2.0_550.1_00875.t1 | 2 | 2 | Tmemb_cc2 | 189 | 582 | 0.0 | 397.0 | 0.0 | 0.0 | 397.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_550.1_00875.t1 | gi|676432760|ref|XP_009046679.1| | hypothetical protein LOTGIDRAFT_237886 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_550.1_00875.t1 | gi|555981964|ref|XP_005902893.1| | PREDICTED: transmembrane and coiled-coil domains protein 1 isoform X2 [Bos mutus] | 0.0 |
| pfu_aug2.0_550.1_00875.t1 | gi|471355622|ref|XP_004368414.1| | PREDICTED: transmembrane and coiled-coil domains protein 1 isoform X2 [Trichechus manatus latirostris] | 0.0 |
| pfu_aug2.0_550.1_00875.t1 | gi|558102922|ref|XP_006083868.1| | PREDICTED: transmembrane and coiled-coil domains protein 1 isoform X2 [Myotis lucifugus] | 0.0 |
| pfu_aug2.0_550.1_00875.t1 | gi|395847205|ref|XP_003796273.1| | PREDICTED: transmembrane and coiled-coil domains protein 1 isoform X2 [Otolemur garnettii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_550.1_00875.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_550.1_00875.t1 atgataaaaggaacacacgatgaacaaataaaaaccggcactgatggaatccttataaagaacagtagaaatagagcaaa aagtagtttccgtccagttttacgttttcttggaaaaggagatttgatacttccagacagacatgccaaacagggactac atcagaatggaataagcacggtcctgtcgccagatgtctctgctaaggagagatcgtctgccgatgtctgtggtacctcc ccacaaagtcggtcatacaataacatgagaaaatctgacgccagtaaaattccagccttgaaaagcgttaagaaagtgtg tgtgccatcgaaaagtccaagcttgcctaagaaacctcagtcttccccagacaatgtggccccagggggcaaacctcgat cgggatccaacctcagtgtacctacaactgaggacccctccatggtacgcagtacagaggacctcgaaagtgaggaagta agtagtcgtgagaatggcagcagcggggagggggcgctggatgagtttgatggggccgctcccggagagacggatcctca gaaaacgaaagccgccatagaccatatacagactaaaatcacacgtaccatggatctcataaaggaagaacaagcagtca aagaacagaacgtgaatgaatatttacgtttagctgggagtgcagataagcaacagcttacaaggattaaagctgcattt gaaaagaaaaaccagaaatccacgcaaagtttgagtagtcttcagaagaagctggagggctaccataaacgacaggcaga gctagaaaagtatggtgtatctagtcacaagccagcaaaagaagtgctcaaagatgtaggccatggattgaaaggtgttg ttgataaagccaagggtgccaaagattccatagtgtcaaagcctaaagaatttgctcatcttataaagaacaagtttggt agtgctgataacatcacccagatgaaagtgacagaagaaggggcatcaacagaaggggagaaaactcctcatggcagtac ccttccagctagttttaaatacccttcagaggatgatgcttccagtataacatcagagtcaggagtaggtcagcaaagtt cacctccctcactctcccacaatgcatcacaaaatttacccatgagtccccagatacagcttgagccaatcatgcatgag cttgaagaattcaaagaagcacatagaagactggaagatctcacaaagcaaattcttgaagaatttcaagatttcaaggt caagacgcagagtgagaccagtttactccaaagactattggatgaagagagatacagaacggaacgactggaggagcaga tcaacgacatgtcagagttacatcaaaatgagatgaccaacttaagacaggatatatccagcatggaagaaaagatagag tacagactagatgagcgcacaacagatatccatgaaatgctagaaaattgccaaacacgggttaccaagatggaacttca gcaacaacagcagcagatcatctccatggaaatggtagataacgtgacctttcgaactttgttgacaaaactcctcaatg ttgtcctggctatacttgctgtgatattagtattcgtatcgacggctgccaacttggtagcaccgtttttaactacaagg gcacgtatcctgagtacaattgtactaattgtaagtgtggttgtgattggaaggaactatgatgtcatatttggatttat agccggagtctataattacttcgccggatttctcccagcaagttga |
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Protein
| Protein ID | pfu_aug2.0_550.1_00875.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_550.1_00875.t1 MIKGTHDEQIKTGTDGILIKNSRNRAKSSFRPVLRFLGKGDLILPDRHAKQGLHQNGISTVLSPDVSAKERSSADVCGTS PQSRSYNNMRKSDASKIPALKSVKKVCVPSKSPSLPKKPQSSPDNVAPGGKPRSGSNLSVPTTEDPSMVRSTEDLESEEV SSRENGSSGEGALDEFDGAAPGETDPQKTKAAIDHIQTKITRTMDLIKEEQAVKEQNVNEYLRLAGSADKQQLTRIKAAF EKKNQKSTQSLSSLQKKLEGYHKRQAELEKYGVSSHKPAKEVLKDVGHGLKGVVDKAKGAKDSIVSKPKEFAHLIKNKFG SADNITQMKVTEEGASTEGEKTPHGSTLPASFKYPSEDDASSITSESGVGQQSSPPSLSHNASQNLPMSPQIQLEPIMHE LEEFKEAHRRLEDLTKQILEEFQDFKVKTQSETSLLQRLLDEERYRTERLEEQINDMSELHQNEMTNLRQDISSMEEKIE YRLDERTTDIHEMLENCQTRVTKMELQQQQQQIISMEMVDNVTFRTLLTKLLNVVLAILAVILVFVSTAANLVAPFLTTR ARILSTIVLIVSVVVIGRNYDVIFGFIAGVYNYFAGFLPAS |
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