Gene
| Gene Model ID | pfu_aug2.0_550.1_00878 |
|---|---|
| Locus | scaffold550.1 : 209923 ... 218291 : - |
| To GenomeBrowser | scaffold550.1:209923..218291 |
| Genes list of scaffold | scaffold550.1 |
| Synonym | pfu_aug1.0_9494.1_24570 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mitochondrial ribosomal protein isoform a | GO:0003735 GO:0005763 GO:0006412 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_550.1_00878.t1 | 1 | 1 | Ribosomal_S14 | 88 | 140 | 1.8e-18 | 65.6 | 3.1e-22 | 4.6e-18 | 64.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_550.1_00878.t1 | gi|195457134|ref|XP_002075441.1| | GK15113 [Drosophila willistoni] | 9.99967e-42 |
| pfu_aug2.0_550.1_00878.t1 | gi|195164012|ref|XP_002022843.1| | GL14528 [Drosophila persimilis] | 9.99967e-42 |
| pfu_aug2.0_550.1_00878.t1 | gi|195059503|ref|XP_001995650.1| | GH17650 [Drosophila grimshawi] | 3.00004e-41 |
| pfu_aug2.0_550.1_00878.t1 | gi|195398777|ref|XP_002057997.1| | GJ15736 [Drosophila virilis] | 4.00001e-41 |
| pfu_aug2.0_550.1_00878.t1 | gi|194763000|ref|XP_001963622.1| | GF20191 [Drosophila ananassae] | 4.99997e-41 |
Transcript
| Transcript ID | pfu_aug2.0_550.1_00878.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_550.1_00878.t1 atggcggcgcccttgacagtttgtggaagattgattaattttgttcgtcccacttgcagtacatctgcacagtttttaaa aagcaatgaacacaagggacataatcttgagcagacacgtaccaaatatgtgagctggctgatgcataaagacaatagga ggaggaaaacctttgaggaacatgctcctgaaagacttcggatcaatgccattaggaaaaataccattttacccaaagaa ataagggaaatggcagataaagaaatcaaagaattacccctggacagttctattgtacgcttacataaacgatgcattct aacatcacgaccaaggggaaacgtgaaaaagtggcgcattagtcgcattatgttcagaagtctggcagattataacaaat tacctggagttactcgtgctgtgtggtag |
|
Protein
| Protein ID | pfu_aug2.0_550.1_00878.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_550.1_00878.t1 MAAPLTVCGRLINFVRPTCSTSAQFLKSNEHKGHNLEQTRTKYVSWLMHKDNRRRKTFEEHAPERLRINAIRKNTILPKE IREMADKEIKELPLDSSIVRLHKRCILTSRPRGNVKKWRISRIMFRSLADYNKLPGVTRAVW |
|