Gene
| Gene Model ID | pfu_aug2.0_550.1_00879 |
|---|---|
| Locus | scaffold550.1 : 218392 ... 244441 : + |
| To GenomeBrowser | scaffold550.1:218392..244441 |
| Genes list of scaffold | scaffold550.1 |
| Synonym | pfu_aug1.0_9494.1_24568 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| elongation factor 1-alpha-like | GO:0003746 GO:0003924 GO:0005525 GO:0005737 GO:0006414 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_550.1_00879.t2 | 1 | 1 | GTP_EFTU | 5 | 237 | 0.0 | 189.7 | 0.0 | 0.0 | 189.2 |
| pfu_aug2.0_550.1_00879.t2 | 2 | 1 | GTP_EFTU_D2 | 10 | 23 | 1.0e-17 | 64.0 | 7.0 | 15000.0 | -3.9 |
| pfu_aug2.0_550.1_00879.t2 | 2 | 2 | GTP_EFTU_D2 | 260 | 326 | 1.0e-17 | 64.0 | 5.4e-21 | 1.2e-17 | 63.8 |
| pfu_aug2.0_550.1_00879.t2 | 2 | 1 | GTP_EFTU_D3 | 286 | 313 | 8.7e-37 | 125.2 | 2.9 | 6200.0 | -2.6 |
| pfu_aug2.0_550.1_00879.t2 | 2 | 2 | GTP_EFTU_D3 | 334 | 441 | 8.7e-37 | 125.2 | 1.1e-39 | 2.4e-36 | 123.8 |
Transcript
| Transcript ID | pfu_aug2.0_550.1_00879.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_550.1_00879.t1 atgggaaaagaaaagacccacatcaacatcgtcgtcattggtcatgtcgactccggtaaatccaccaccactggtcactt gatctacaagtgtggaggtattgacaagagaaccatcgagaagtttgagaaggaggctgctgagatgggaaaaggttcct tcaaatatgcctgggtattggacaaactgaaggcagagcgtgaacgtggtatcactattgatattgccctgtggaagttt gaaacaaccaaatactacattaccatcattgatgcccctggccacagagatttcatcaagaacatgatcacaggtgctga ctgcgcagtgttgattgtggctgccggtgttggagaatttgaggctggtatttctaaaaacggacagactcgtgaacatg ccttgttggccttcacattgggagtaaaacagctgatcgttggtgtcaacaagatggacagcactgaaccagcttattct gaggcacgttttactgaaattgaaaaagaagtcagcgcttatgtcaaaaagattggttataatcctaaaaatgtggcatt tgtaccaatttctggatggcatggagacaacatgcttgaggaatctgataatatgaaatggtttaaaggatggtccattg agagaaaggagggaaatgccagtggtaaaacactgtttaatgctctggatgccattttacctcctcagagaccaactgag aagcctcttcgtctgcctctacaggacgtatacaaaataggaggtattggaacagtgccagttggtagagtggagactgg tatacttaaaccaggaatggttgttacctttgctccagtcaatgtcactactgaagtaaaatctgtggagatgcaccacg agtctttaccagaggctttacctggagataatgttggttttaacgtgaaaaacgtatctgtcaaagatgtaaagagagga aatgttgctggagacagcaaaagcgatccacccaagggagcaaagacattctatgcccaggtcattattctgaaccaccc tggtgaaattcgcagtggttacgcacctgtcctcgattgtcacactgcccacattgcctgcaaatttactgaaatcaagg aaaaggtggaccgtcgtagcggtaaaaaacttgaagacaaccccaaatttgtcaaatctggtgatgctgccatggttgac atgaccccccagaaaccaatgtgtgtagaagccttttcagaatacgccccacttggacgttttgctgtccgtgacatgag acagaccgtggctgttggagtcataaaaagcgttgagaaagcagaggccactggtggtaaggtaaccaaagcagcccaga aagctcagaagaagtga |
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| Transcript ID | pfu_aug2.0_550.1_00879.t2 |
| Definition | - |
>pfu_aug2.0_550.1_00879.t2 atgggaaaagaaaagacccacatcaacatcgtcgtcattggtcatgtcgactccggtaaatccaccaccactggtcactt gatctacaagtgtggaggtattgacaagagaaccatcgagaagtttgagaaggaggctgctgagatgggaaaaggttcct tcaaatatgcctgggtattggacaaactgaaggcagagcgtgaacgtggtatcactattgatattgccctgtggaagttt gaaacaaccaaatactacattaccatcattgatgcccctggccacagagatttcatcaagaacatgatcacaggtacatc tcaggctgactgcgcagtgttgattgtggctgccggtgttggagaatttgaggctggtatttctaaaaacggacagactc gtgaacatgccttgttggccttcacattgggagtaaaacagctgatcgttggtgtcaacaagatggacagcactgaacca gcttattctgaggcacgttttactgaaattgaaaaagaagtcagcgcttatgtcaaaaagattggttataatcctaaaaa tgtggcatttgtaccaatttctggatggcatggagacaacatgcttgaggaatctgataatatgaaatggtttaaaggat ggtccattgagagaaaggagggaaatgccagtggtaaaacactgtttaatgctctggatgccattttacctcctcagaga ccaactgagaagcctcttcgtctgcctctacaggacgtatacaaaataggaggtattggaacagtgccagttggtagagt ggagactggtatacttaaaccaggaatggttgttacctttgctccagtcaatgtcactactgaagtaaaatctgtggaga tgcaccacgagtctttaccagaggctttacctggagataatgttggttttaacgtgaaaaacgtatctgtcaaagatgta aagagaggaaatgttgctggagacagcaaaagcgatccacccaagggagcaaagacattctatgcccaggtcattattct gaaccaccctggtgaaattcgcagtggttacgcacctgtcctcgattgtcacactgcccacattgcctgcaaatttactg aaatcaaggaaaaggtggaccgtcgtagcggtaaaaaacttgaagacaaccccaaatttgtcaaatctggtgatgctgcc atggttgacatgaccccccagaaaccaatgtgtgtagaagccttttcagaatacgccccacttggacgttttgctgtccg tgacatgagacagaccgtggctgttggagtcataaaaagcgttgagaaagcagaggccactggtggtaaggtaaccaaag cagcccagaaagctcagaagaagtga |
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Protein
| Protein ID | pfu_aug2.0_550.1_00879.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_550.1_00879.t1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYITIIDAPGHRDFIKNMITGADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPAYS EARFTEIEKEVSAYVKKIGYNPKNVAFVPISGWHGDNMLEESDNMKWFKGWSIERKEGNASGKTLFNALDAILPPQRPTE KPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPVNVTTEVKSVEMHHESLPEALPGDNVGFNVKNVSVKDVKRG NVAGDSKSDPPKGAKTFYAQVIILNHPGEIRSGYAPVLDCHTAHIACKFTEIKEKVDRRSGKKLEDNPKFVKSGDAAMVD MTPQKPMCVEAFSEYAPLGRFAVRDMRQTVAVGVIKSVEKAEATGGKVTKAAQKAQKK |
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| Protein ID | pfu_aug2.0_550.1_00879.t2 |
| Definition | - |
>pfu_aug2.0_550.1_00879.t2 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP AYSEARFTEIEKEVSAYVKKIGYNPKNVAFVPISGWHGDNMLEESDNMKWFKGWSIERKEGNASGKTLFNALDAILPPQR PTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPVNVTTEVKSVEMHHESLPEALPGDNVGFNVKNVSVKDV KRGNVAGDSKSDPPKGAKTFYAQVIILNHPGEIRSGYAPVLDCHTAHIACKFTEIKEKVDRRSGKKLEDNPKFVKSGDAA MVDMTPQKPMCVEAFSEYAPLGRFAVRDMRQTVAVGVIKSVEKAEATGGKVTKAAQKAQKK |
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