Gene
| Gene Model ID | pfu_aug2.0_5509.1_32798 |
|---|---|
| Locus | scaffold5509.1 : 726 ... 24936 : + |
| To GenomeBrowser | scaffold5509.1:726..24936 |
| Genes list of scaffold | scaffold5509.1 |
| Synonym | pfu_aug1.0_15228.1_68837 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5509.1_32798.t1 | 2 | 1 | Tubulin | 105 | 253 | 2.00386e-43 | 148.7 | 1.4013e-45 | 5.79997e-42 | 143.9 |
| pfu_aug2.0_5509.1_32798.t1 | 2 | 2 | Tubulin | 253 | 276 | 2.00386e-43 | 148.7 | 0.0088 | 44.0 | 3.8 |
| pfu_aug2.0_5509.1_32798.t1 | 1 | 1 | Tubulin_C | 314 | 442 | 0.0 | 163.6 | 0.0 | 0.0 | 162.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5509.1_32798.t1 | gi|557275746|ref|XP_006021047.1| | PREDICTED: tubulin gamma-1 chain [Alligator sinensis] | 0.0 |
| pfu_aug2.0_5509.1_32798.t1 | gi|676431085|ref|XP_009046135.1| | hypothetical protein LOTGIDRAFT_237817 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_5509.1_32798.t1 | gi|556971357|ref|XP_005994087.1| | PREDICTED: tubulin gamma-1 chain [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_5509.1_32798.t1 | gi|597751558|ref|XP_007237662.1| | PREDICTED: tubulin gamma-1 chain [Astyanax mexicanus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_5509.1_32798.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5509.1_32798.t1 atgaaacgttgtttgtacggattcttatgcattttaggtatgcagtataagtatggcaaatctaaatctaaattgttagt gtcgaagccaaaagaagcaagaggcagaaagtctctaccgcttccgctacaacagttcgggaaagctaaaaattcggcaa cgttgtcaaattcggaggttactaaaagacggaatggcggaataacggaacgacggaacaaactaaaaaacggaacagaa tgtcccgtatattataatataaaaacccggaatatgtacggacgcggaacagatgaaaaaaacggaaaacggaacattgg tatggaattttggaagcaactatgtgcagagcatggtatcagtccagagggaatactagaagactatgccacagagggga ctgacagaaaagatgtcttcttttatcaggctgatgatgaacactacattcccagagccgtcctactagatctggagcca agagtcatcaacacgataatgaactcgccatacgccaacctgtataaccctgaaaatatatacctgtccaagcacggtgg gggagcagggaacaactgggcctctggttactgtcaggcagagaagttatatgaggagatatttgacatcatagacagag aagccgacggtagtgacagtttagagggttttgttctgtgtcattctatagccggcggtacaggatcaggaatgggttca tacttactggagagacttaatgacaggtactctcaggtagtgttggataacacagctttgaataggatagctgctgacag acttcacatagaaactccaaacttctcacaaatcaaccaactggtttccacggtgatgtctacaagtacagccaccctgc gttaccctggttatatgaacaacgatcttattggtctgatagcctcccttatacctacaccaagattacattacctgatg acgggatatacacctcttgccacggatatgaacgttgccagtgtgagaaaaactacagtattagacgttatgaggcggtt actacagcccaaaaacatgatggtctctactccagtacaaagacaagccaaccattgttatatctctatactcaatatta tacagggcgaggttgatccaacacaggtacacaaaagtctacagcggatcagggagcgtaagttggcccagtttattccc tggggaccggccagtatccaagtagctttatcacggaagtctccctacatacagacgtcacatagagtcagtgggcttat gttggccaaccatacaagtatatctagtttgtttgagcgcaccctcagacagtacgacaagttaaggaagagagaagctt tcatggatcagtttaagaaagaagcaatgtttaaagacaatttagatgagtttgataattctcgagaagtcattcagcaa ctggtggacgagtatcaggcggcgacaaaacctgactatctatcatggggaacacaacaggctgcagctgcctcttcaga gaggatttaa |
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Protein
| Protein ID | pfu_aug2.0_5509.1_32798.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5509.1_32798.t1 MKRCLYGFLCILGMQYKYGKSKSKLLVSKPKEARGRKSLPLPLQQFGKAKNSATLSNSEVTKRRNGGITERRNKLKNGTE CPVYYNIKTRNMYGRGTDEKNGKRNIGMEFWKQLCAEHGISPEGILEDYATEGTDRKDVFFYQADDEHYIPRAVLLDLEP RVINTIMNSPYANLYNPENIYLSKHGGGAGNNWASGYCQAEKLYEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGS YLLERLNDRYSQVVLDNTALNRIAADRLHIETPNFSQINQLVSTVMSTSTATLRYPGYMNNDLIGLIASLIPTPRLHYLM TGYTPLATDMNVASVRKTTVLDVMRRLLQPKNMMVSTPVQRQANHCYISILNIIQGEVDPTQVHKSLQRIRERKLAQFIP WGPASIQVALSRKSPYIQTSHRVSGLMLANHTSISSLFERTLRQYDKLRKREAFMDQFKKEAMFKDNLDEFDNSREVIQQ LVDEYQAATKPDYLSWGTQQAAAASSERI |
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