Gene
| Gene Model ID | pfu_aug2.0_553.1_10915 |
|---|---|
| Locus | scaffold553.1 : 19278 ... 24105 : - |
| To GenomeBrowser | scaffold553.1:19278..24105 |
| Genes list of scaffold | scaffold553.1 |
| Synonym | pfu_aug1.0_2067.1_29964 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_553.1_10915.t1 | 2 | 1 | F-box | 29 | 74 | 2.4e-09 | 36.5 | 3.2e-13 | 2.4e-09 | 36.5 |
| pfu_aug2.0_553.1_10915.t1 | 1 | 1 | F-box-like | 30 | 71 | 1.3e-07 | 31.1 | 4.4e-11 | 3.3e-07 | 29.9 |
| pfu_aug2.0_553.1_10915.t1 | 2 | 2 | F-box | 281 | 297 | 2.4e-09 | 36.5 | 0.27 | 2000.0 | -1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_553.1_10915.t1 | gi|676436273|ref|XP_009047828.1| | hypothetical protein LOTGIDRAFT_139698 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_553.1_10915.t1 | gi|524908108|ref|XP_005109161.1| | PREDICTED: F-box only protein 39-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_553.1_10915.t1 | gi|573906915|ref|XP_006641177.1| | PREDICTED: F-box only protein 39-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_553.1_10915.t1 | gi|625248064|ref|XP_007615316.1| | PREDICTED: F-box only protein 39 isoform X2 [Cricetulus griseus] | 0.0 |
| pfu_aug2.0_553.1_10915.t1 | gi|532011793|ref|XP_005349686.1| | PREDICTED: F-box only protein 39 [Microtus ochrogaster] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_553.1_10915.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_553.1_10915.t1 atggatgtaggatggttggaaaccatagccaaaatagtccgggatagtattggaatattatttttctcaacaatggaaca gtcaaaatgggctaacctaccggacctggttattcttgaaatttacaagtatctaagcgacgcggaccgcttgagcacgg ctttagtgtgcaagaactggctgcgaatgttccatgcgccatgtctatggcggtggcgctccttcgacatgggcggctat cgggcgctaaagagcgggatacgcgcctgtcagtttgcggagatcctcggctcacatcttcggtacctcaccataacatg taatcatccgtcttaccacacggcgaaagtgtttcagaaagctatggaggacctcttgctaaagatcagatcggcaaaaa tagttgaattcgaaatggagaaacttgaactagaccgattctggaagtatgaaacagcacgtgataaactcaccaataat cttgttcgatttttcaaaggccaggtaaaaattagaatgttcgatatgacggcagcacaaattcccgcgctcggaggcat tcggattttggaaactgtaggaagtagttctggagagaaagttgaagaaatttatctagaggatttctttcattcaagaa ttgcagcgtttcagataccgcgattcgttcaagctattacatgtttcaaagaattgaggttcatagcgataaactacaac tgcgtatcggatgaaattctggaaatgtttgcaaaatcactcaagggtaaactaagatgcctgaacatgaaagtgtacag gaacgacccacatcgtcaccaagtttcgccatatatttggaaacgcctccggaacgcatgcccaaaacttcgggtaaccg tttggatcgaaagtatcggattttacgaagaagtacttccggttcttagtaaggatatgccgctacgcgagtttcatatg tggaccggatatgacgatgatgcagagtggcgactccacgatacaatttatcatttgaccaatacctacacaggctcact ggaatccgtttccttggagatggataacaaccatgagattgtagatgaagcactactagcgctcctgggacgatgtaagc tactgagggagttgaccttgaacgccgttgtcatggtacccaccatagaggtcataatgcaccttatcacagaaaggaaa ataaatcttcagtttttccacttcacagcctgtggtatatcagaaacagagtggttggaactttgtgaaatcaaggacat gttcaccccggtcatagaggagaggggtcttaatattaaatttacaacagatctactaattgatgttacctga |
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Protein
| Protein ID | pfu_aug2.0_553.1_10915.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_553.1_10915.t1 MDVGWLETIAKIVRDSIGILFFSTMEQSKWANLPDLVILEIYKYLSDADRLSTALVCKNWLRMFHAPCLWRWRSFDMGGY RALKSGIRACQFAEILGSHLRYLTITCNHPSYHTAKVFQKAMEDLLLKIRSAKIVEFEMEKLELDRFWKYETARDKLTNN LVRFFKGQVKIRMFDMTAAQIPALGGIRILETVGSSSGEKVEEIYLEDFFHSRIAAFQIPRFVQAITCFKELRFIAINYN CVSDEILEMFAKSLKGKLRCLNMKVYRNDPHRHQVSPYIWKRLRNACPKLRVTVWIESIGFYEEVLPVLSKDMPLREFHM WTGYDDDAEWRLHDTIYHLTNTYTGSLESVSLEMDNNHEIVDEALLALLGRCKLLRELTLNAVVMVPTIEVIMHLITERK INLQFFHFTACGISETEWLELCEIKDMFTPVIEERGLNIKFTTDLLIDVT |
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