Gene
| Gene Model ID | pfu_aug2.0_553.1_10923 |
|---|---|
| Locus | scaffold553.1 : 188489 ... 206977 : - |
| To GenomeBrowser | scaffold553.1:188489..206977 |
| Genes list of scaffold | scaffold553.1 |
| Synonym | pfu_aug1.0_2968.1_01269 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_553.1_10923.t1 | 1 | 1 | SH3_9 | 229 | 282 | 1.3e-11 | 43.9 | 1.4e-14 | 3.4e-11 | 42.5 |
| pfu_aug2.0_553.1_10923.t1 | 1 | 1 | His_Phos_1 | 349 | 538 | 5.3e-26 | 91.5 | 4.9e-29 | 1.2e-25 | 90.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_553.1_10923.t1 | gi|524886218|ref|XP_005099706.1| | PREDICTED: protein UBASH3A homolog [Aplysia californica] | 0.0 |
| pfu_aug2.0_553.1_10923.t1 | gi|390336031|ref|XP_796030.3| | PREDICTED: protein UBASH3A homolog isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_553.1_10923.t1 | gi|391332966|ref|XP_003740897.1| | PREDICTED: protein UBASH3A homolog [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_553.1_10923.t1 | gi|507705926|ref|XP_004716328.1| | PREDICTED: ubiquitin-associated and SH3 domain-containing protein B [Echinops telfairi] | 0.0 |
| pfu_aug2.0_553.1_10923.t1 | gi|585694828|ref|XP_006895668.1| | PREDICTED: ubiquitin-associated and SH3 domain-containing protein B [Elephantulus edwardii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_553.1_10923.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_553.1_10923.t1 atggcgtctgctatccttccagagagaagaaatcgcgatgaatctatcaaaagacaacaaagtagacctactaaggaaat tctaatgcaaatgggattctcagaaaaaagagcggagaaagcaacagcagcgacaggtgataggggtattcagctagcct cagactgggagaaagcaacagcagcgacaggtgataggggtattcagctagcctcagactggttactatcacatatcaat gaccctttacttgatgaaggagaggagagggaatacatactgtacctctgtcccagtggaccactacagaaaaattttga catattctggaataaaagtttgaatcagtgtggatggaatggcgctcattcttactttcctcacattacactatcaccgt ttttcaaggcaccaaactctaaagtagaagccctgagtaaagcctttgccaatcttgaccatatgatgcacaatgcaccg tgtaaactggagtttgattttttcaggatagcgatggaaccccataagaagcagcttcacattacgctggcttatcagta ttccccagaacaacatgatactctactaaagctggccaaggagatagacattaacgcagatggaaaatgggaattacgac tcttctcacgggaccctaagtttggtaaaagtgatgtacgtaatgtgatcaaggactacaccccacaagtaggggatgag ttagagctgatagaaggtgactatatatttatggaccacagagaactagagaaaagtaaggatggctggtaccagggcac gtcatggctgacaggaaactctgggatgttccctggtaattatacacatcgtacggcagaaacatggacttggacgttac atagatctctgaccatgtatgtgaagccaactaccaaaccaatcagtaatggctttattgtggaagaagattatgacagt atattgcatgatgagaaaaactatgccaaggtggtgaggagacgacagagcttagcccatcctggtaggaggacgccccg atgtctgtacgtgttacgtcacggggagaggatagacttcgccctcggaaaatcttggtttgacatgtgctatgatgatg aaggtaaatattcacaagtaaatttgaacatgccaaagaaaatgctgaagaggaaaacccacctagagtttattaaagac actcctttaaccaatgtaggaaagctacaggccaggcttacaggagagcactttaaggacacagatatcaatatttccct cgtgttctgttctccggcactccgatgtatacaaacagctaatgaagtttacacagcccttggtctccagaacaagataa agatagagcctgggttatttgagtggacaggtcatataggtatcccccgctggatgtcccccgaggagctggaggggcag ggctaccccatagacctggggtacacccctcagatacccatagaaaaactccgagacgaggagagtgtggaacatctata tgcacggtcaacggaatgtacacggcaaatactacataaatatgaaaaacaagatggcagtgttttgttggtgggtcatg ctggtacattggagctgtgtacgaggattcttgtcggtcaaagttcacgaccgctaatgaagtatagagaaatcctgccg aaagttccgtacgtctccgtgtgtgcaatagaagaggatcttgtaacaaagaaatggacgtttctagaaaatcaatggct gccacttacacatgggcgcaatacgatggaggacctgacacatttattgaaaaacacctag |
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Protein
| Protein ID | pfu_aug2.0_553.1_10923.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_553.1_10923.t1 MASAILPERRNRDESIKRQQSRPTKEILMQMGFSEKRAEKATAATGDRGIQLASDWEKATAATGDRGIQLASDWLLSHIN DPLLDEGEEREYILYLCPSGPLQKNFDIFWNKSLNQCGWNGAHSYFPHITLSPFFKAPNSKVEALSKAFANLDHMMHNAP CKLEFDFFRIAMEPHKKQLHITLAYQYSPEQHDTLLKLAKEIDINADGKWELRLFSRDPKFGKSDVRNVIKDYTPQVGDE LELIEGDYIFMDHRELEKSKDGWYQGTSWLTGNSGMFPGNYTHRTAETWTWTLHRSLTMYVKPTTKPISNGFIVEEDYDS ILHDEKNYAKVVRRRQSLAHPGRRTPRCLYVLRHGERIDFALGKSWFDMCYDDEGKYSQVNLNMPKKMLKRKTHLEFIKD TPLTNVGKLQARLTGEHFKDTDINISLVFCSPALRCIQTANEVYTALGLQNKIKIEPGLFEWTGHIGIPRWMSPEELEGQ GYPIDLGYTPQIPIEKLRDEESVEHLYARSTECTRQILHKYEKQDGSVLLVGHAGTLELCTRILVGQSSRPLMKYREILP KVPYVSVCAIEEDLVTKKWTFLENQWLPLTHGRNTMEDLTHLLKNT |
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