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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_554.1_14300
Locus scaffold554.1 : 116856 ... 161197 : +
To GenomeBrowser scaffold554.1:116856..161197
Genes list of scaffold scaffold554.1
Synonym pfu_aug1.0_1207.1_65885

Manual annotation
Annotation by Blast2GO
Annotation GO
cadherin- isoform f GO:0001745 GO:0005515 GO:0007155 GO:0007411 GO:0010769 GO:0010975 GO:0016020 GO:0044464 GO:0048675

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_554.1_14300.t1 17 1 Cadherin 301 367 0.0 444.0 0.0039 7.3 6.9
pfu_aug2.0_554.1_14300.t1 17 2 Cadherin 397 451 0.0 444.0 0.00047 0.87 9.8
pfu_aug2.0_554.1_14300.t1 17 3 Cadherin 454 520 0.0 444.0 5.4e-06 0.01 16.0
pfu_aug2.0_554.1_14300.t1 17 4 Cadherin 520 608 0.0 444.0 8.2e-10 1.5e-06 28.3
pfu_aug2.0_554.1_14300.t1 17 5 Cadherin 629 654 0.0 444.0 0.044 82.0 3.5
pfu_aug2.0_554.1_14300.t1 17 6 Cadherin 657 677 0.0 444.0 1.6 2900.0 -1.5
pfu_aug2.0_554.1_14300.t1 17 7 Cadherin 694 787 0.0 444.0 2.9e-18 5.3e-15 55.4
pfu_aug2.0_554.1_14300.t1 6 1 Cadherin_2 697 758 1.2e-06 27.9 8.4e-05 0.16 11.5
pfu_aug2.0_554.1_14300.t1 17 8 Cadherin 803 890 0.0 444.0 3.5e-22 6.6e-19 67.9
pfu_aug2.0_554.1_14300.t1 6 2 Cadherin_2 839 859 1.2e-06 27.9 0.78 1400.0 -1.2
pfu_aug2.0_554.1_14300.t1 17 9 Cadherin 908 1010 0.0 444.0 3.2e-10 6.0e-07 29.6
pfu_aug2.0_554.1_14300.t1 17 10 Cadherin 1031 1123 0.0 444.0 6.1e-14 1.1e-10 41.5
pfu_aug2.0_554.1_14300.t1 6 3 Cadherin_2 1067 1095 1.2e-06 27.9 0.18 330.0 0.9
pfu_aug2.0_554.1_14300.t1 17 11 Cadherin 1145 1230 0.0 444.0 2.7e-15 4.9e-12 45.9
pfu_aug2.0_554.1_14300.t1 6 4 Cadherin_2 1182 1203 1.2e-06 27.9 0.37 690.0 -0.1
pfu_aug2.0_554.1_14300.t1 3 1 Laminin_G_1 1187 1216 1.5e-27 96.1 1.6 3000.0 -1.9
pfu_aug2.0_554.1_14300.t1 17 12 Cadherin 1251 1312 0.0 444.0 1.8e-11 3.4e-08 33.6
pfu_aug2.0_554.1_14300.t1 6 5 Cadherin_2 1290 1312 1.2e-06 27.9 0.0066 12.0 5.5
pfu_aug2.0_554.1_14300.t1 17 13 Cadherin 1352 1443 0.0 444.0 1.2e-21 2.3e-18 66.2
pfu_aug2.0_554.1_14300.t1 6 6 Cadherin_2 1391 1414 1.2e-06 27.9 4.4 8200.0 -3.6
pfu_aug2.0_554.1_14300.t1 17 14 Cadherin 1464 1489 0.0 444.0 5.8 11000.0 -3.3
pfu_aug2.0_554.1_14300.t1 17 15 Cadherin 1506 1598 0.0 444.0 2.4e-18 4.4e-15 55.7
pfu_aug2.0_554.1_14300.t1 17 16 Cadherin 1659 1718 0.0 444.0 0.0001 0.19 12.0
pfu_aug2.0_554.1_14300.t1 17 17 Cadherin 1751 1802 0.0 444.0 0.69 1300.0 -0.3
pfu_aug2.0_554.1_14300.t1 2 1 Laminin_G_2 1994 2150 0.0 159.3 1.3e-31 2.5e-28 98.6
pfu_aug2.0_554.1_14300.t1 3 2 Laminin_G_1 1994 2152 1.5e-27 96.1 1.0e-17 1.9e-14 53.8
pfu_aug2.0_554.1_14300.t1 2 2 Laminin_G_2 2256 2387 0.0 159.3 5.6e-19 1.0e-15 57.8
pfu_aug2.0_554.1_14300.t1 3 3 Laminin_G_1 2256 2389 1.5e-27 96.1 6.8e-13 1.3e-09 38.1
pfu_aug2.0_554.1_14300.t1 1 1 Cadherin_C 2558 2691 0.0 166.6 0.0 0.0 164.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_554.1_14300.t1 gi|350418529|ref|XP_003491887.1| 0.0
pfu_aug2.0_554.1_14300.t1 gi|340722540|ref|XP_003399662.1| 0.0

Transcript
Transcript IDpfu_aug2.0_554.1_14300.t1
Definition-
>pfu_aug2.0_554.1_14300.t1
atggcgcctgccactggagttaggacttatctgtgcttgtgtttgaattttgtgttttgtatgttacagtttttaccaca
aacatacactaaaagtgttttaacagtaccacacgacgcagaaccaggatattttatctcgcaaatagcttgtacccgac
cggaagtaaggattaggacctttggtgaaaattcaaaggagttctatgataagtttcatatcacaaataccggagttcta
gtggtgaaatccacattatcattatcgtccgatatagacaaaacatactatttttcagcatatcaaaacagaaggtgttt
cgatcgagtaaaaagccatgacaacttcataattcatgttagaaattcaaggaaggttgttcatttttcgaaaagattat
attcatttaggttactcaaatcacagtccggagtaacagtggtacaaaatggagagcttatacgctataaccatgacaac
catataccagacgacagggtcaaattctttttgaagggaacgtctgctaaatatttcagtgttgttgaagtgtctccaaa
atcattgaggatcgaagcttctagcagctttgatatctcgacatcacgcattttgcatttccgattattcgcagaataca
acaatgcaattttgggtgtggtggatataaatataatcgccctgccccaggagaacatagatcaaccgttgtctgtacaa
tctcctcaacccaatcatgtacaatcccaagcacgtgtacattcggctcgaccaagtgtacttgtcgtcaattttgacca
aactccaaatggcggccgtcttgaatcccagacaggattacgtagggtccgacgtcagactggcattccgacctccactc
tatcgtttgacgtcaatgaaacagccaccggcagattgttcacagtggaccctggggtaccaccgggtaccgtgtatgct
tttaacctcacggaggccacgccccagaacatcttttccgtggacagtgacggaaacgttagcctcaggccaggggaacg
cctacagtacgattttgacggtaccagaacgtacacaatcagcttagaggtcatcagtggaagtgaagttttgcggcgag
tgatcgtgaccctgaatgtgctcaacgtcaacgatgagaatccttactttacgacaaggccgacaccttacttggctaca
ataccagaacaagcagaggccagactgaaagtccttcagctccaggctacagatccagatggagggtctatagtgtactt
tatacccggtatgttgagcgacgattctgttctcccccagaacagctttgaaactacagacaataatggaaataaagtca
aaatcgaggccatcaacttccaagagaggcttggcggtaccatacagtacacagtatatgaaaatgtcaacactaagtcg
acaagatttgccgtcgaggatgggaacctgaaaaccttacagcccctggattatgagaccgaccctcattcttttactct
cacagttatggctcttgattcctataccggcttgagcagcattgcacagactctacctaaaggcagtatagtgaccactg
tgtctgcatcggataaagatgctaataccaatatttcctacactgtcaccaacccgctttttgccgtccctaccagcgga
aatggacagacgggaaatgttattgtgaatggagaactagattacgacaaaacccctcgtaatcgatacgagtttgacat
catagctacagacaacggcataaatccctatcctcgcaatgctacagctagaatcattgttaaccttatcaacgaaaatg
accaagatccgaaatttgacgataacctagtgacgtcccttgtcaataacacagcaggtggcaccaccattttcacagtc
cgcgccactgatgaagacggagatggcattacatattcatttcaagatgatggaagttgctgcgcctctgcacaaccacg
tagcagctcagcaaccgttgtgattaacattatcgatgctgtaaatctgaagcctaattttgtgaattgcgctagctatg
catctacggtattagaggatcaggaacctggagctgtggttaccaaggtttcggcaacagatcaaaacagaggagaaaat
ggagtggttgaatactacatcatagaggaccagaaaaacaccgcagctttattctctattaacaatatgacaggtgaatt
agtaacgagtgccagacttgaccgtgagactcagagctctaggaatctgttcatcaccgtacgagctgtggaccgcggaa
atcctccactagacgactactgtacattcgctatcactgtgggtgacgtcaatgataatgaccccattttcaggtcaaat
caatacacaggtcagattttaaaagcagcctctgtaggtacagtagtactcactgttcaagcggacgacagcgatctggg
aatgaacgcggccattcagtactcaatcacctccaatcccggagattacttcaggatggataaggacaccggtgaaattt
ctgttaacagatcattgaatacagcgagtaacaatgttgttttgtccgtggaagcaaaggatcaagggtcacagccacga
agttctacgtcaacggtcattataacggtcagtacagatcccaatgtccaaccacccagatggacggagattaatccgct
gttccaggtcgcagaaaatgcagatctcaattacatagtagggactcttacggcggaaaatagaatagcagacatctccg
atccgggtttggattttaatattgttggactaaataatcgtctctcacaagtggatccatcgggaaattttattattgca
aaagtttctggcgccgaatcggtcaacattaagatcaacaaaatattggattatgaaactaaacaggagtataccatcac
gatacgtgcatcgaatcgtgccggcggaaatggtatattcagtgataatgtagtaagaattaaggtacaagatgtgaatg
acgttaatccagagttccagaatattaacccagactcaggaaagatagatatatacgtcaaggaaaattctcctgtagga
actgttgtatcgggaatagtggctactgatggtgacctcacagcaccttttaatgagacaaaatacagcctcctgaacac
taatggcagatttaatatagacagagtaacaggtgtcataacaacacggcaggtatttgatcgtgaagctacgtcagacg
acagctccaagtattattatgtgtcggcaatagctgtagatggggcaaactcaagtaagcctggaactaatgggccaaat
actggaagtgtcggtgttcagatcatcattcaggatgagaacgacaactcaccgtattttgaacagtcgttatatacggc
ttccgtacaagaggactcgttcattggtagcagtatcgtaaccgtagcggccaaggacgatgacgatccaaaattcacca
cgttcacctatactcttgaagggtcaagtctgtttgatgttaacagaaggacaggaaccattcgagtggctgggaattta
gactatgagactccacctaatacatatacattaactctcacagtagatgatggaaagtattccaaccgaacaaacgtcca
gatcaccatcattgatactaacgacaattcacccgtctttgataacgatacctatatcatacgcacgataacggagaacg
aagattacactaatagacctcccatacttaaggttcatgcaacagaccctgatacagagagggacagtggaatggagtac
gagatagcccagggcgacagtgtaataaccagtctattctctgtaaaccgtacaacaggggatttaagtctccgaggttc
cctggaccgggatcgacctaacggacctatagatgaaccaggaagcagtaccaggcttactggatatgccacggtacagg
tgttccctattgacgtcaacgacaacgatcccttcttcttgacgtcatcgctaacggcatctgtgcgagaaatgtctgct
gttggcgtttcagtaatgacagtaaaggcagaggactatgatgcgggacagaatgccgaactaacgtataatatcgttga
tggaagccagactcctagagaggccttccgaatgaactctgacggcagcgtgtttactactgttaacaacctggacaggg
aaaccaaccctacatactactttgaagttgttgcgtcagataatggagtccccaaacgttccaccaccgcaacagcaact
gttaacattaaagacataaacgataacagtcccaggttttctcagcgtaaaccagattatgaaaaagcagagcagagaaa
ttttaattttagcgtcattgtcacggacacaatctatagtgatactgcctttgtagtcatagaagttctagacgttaacg
atgaaataccgaacataactccagctcagatagaagtagaacgagatgagaatgttcctgttaacacaacgctagctaca
tttacagctgtcgatgccgatgtagatccaaacaacggagctttcgatttctttatctctgggaagcctatagatgagat
gccaaacttctatttttctatcgatgcaaatggagtagtgcgtgtcaaaaatcctttggactatgaaaagattagtaccc
acatcgtcaaaatcttggccatcgatagaggtttgccaccacagactggtacggctactctgacggtacgactcaataat
ataaatgacaacgcaccgaatctacgtgaagataccgttagctttaaggagaacaccccacctgctatacaagacaaggt
gtacatctatgccgaggacccagacggatcgccatttgccgggccgtttacaatcggagaaggaaattgtgctcctggca
ataatgcatgtgataatttcaacgttgtattttctccaagtcaagaccgagcagagattgtacccttatcacagtttgat
cgggaggaaaagttgttctacgaattaccaattgtaatgtcggacatgagaacagcaacaggagccgacgctgccaaacg
tctgacgggaacaagcaccctgacgatccagatcagcgatgagaatgacaacccaagttctgacggcacacagaacatac
atgtatacaattataagggaatgtttgctaacattttcatcggtagcgctcattatgaggacagggacgatgacagagca
gacaaacaattcagtcttattggatctagtaattactttaatgtctcacaggctgggggtaacatcatgatgttggcaca
tgtcccgtccggacggcacacccttgctataagagtgacggaaactaattcacgagcccctgattttaggaagtctgttc
gatctattgttactatttatatcgaagatctgccagaggaggcaccatacaagtctggttctgtcagattaacaggggaa
gagaatgagaaaaacccaacatccaaggctcagataatttccgtaacggacacggaagttgacggtgtgaagtattgtga
tgtacggtatgctgccctgggttcaccatattatcccgcaagtaaagttgacggaatcgtagagaaggataaagatcagt
tttctgatacattgggtaacggagcaagcattgccatggtatctatagatatgtgtttacgagaaatatgtgagggaggc
ggttgtcataacaaactgatcgtcaaggacgaaccaaacttggtggacgcaaacggaagttcatttgttggcgtggcaac
agaggtcatggctgattgcaactgtccagcagatttcaatgggccacgatgccagcagacctcactgggatttgacggca
ctggatatgcactgttcgagacactgcgacaatgtgaaaactcagtcaccagcattgagttcataaccttaaacgaaaat
gccctcataatgtataatggccctgtacgtgcgttacaggccttggacccagaagattttttcgttttacaaatgagagc
gggttatccggagcttacaataaatcatggtaccgggagtttgacgcttagtgttaacggcagggatgcacaaaataatt
tgaagatggccaaactcaatgacggcaaatggcatcaaatagacataaggaggcaaggaaaggttgtgacactcactgtc
gacaactgcctatccgctgataatgtagagggcgctgttcaggacagaagtccctgcgaggccacaggggcaaccaaggg
agagaacaagtacctaaacatcaatagtcagttacagctcggtggacgatatgcgttccctcgttatccttccaacatat
tgtcggctaaatttagaggctgtatgaggaacttcaggcataatggagagctttatgacctgtacacaaagaatttctat
gacggtataaaagatggatgccccgaagaagatatcgtgtgcggtaaaaactcggcaaacgctcgtaaatgtgagaacgg
catttgtgagatgacagaattccctaaccctccttccaaccctggggcaagtgtctgtatctgtaaccctgggtatagag
gttcattgtgtcaagatgctactacggtgcgtgatttccggaccgacagctttatggactggcaactgaccaacgacttc
atcaacagcctgagcacacgtaagcttgacatccagctacagtacaggtccagggatcgggatggaatgatcttccacgt
acaggctcaggaaggcacagaatttatgagacttgagatcattgacaacattttacaagtcttgtacaactttggggatg
aaaatcgcttcctacaactcagtgaaatttcggcatctgatggcgcctggcataccgtatatataaaacgacgcggacaa
agtctcgtccttcagctagatgggggcgaaggtgataggtatgcggaaatgaattccaactccttgtatcaggaaatggc
catcaaaggagaccagatctatgcaggggcacaagtctcttacgaacacactgcaaccattgatagcaataataagaggg
atttttcatcatcatgcatgaatgacatacgattgaaccaggaatggttcccgatgacgctatcagagaactctcagagt
acaaaagtcagactccagcgagatgtcaacactaacccaggctgtgtcagagaagactgtacgcttaatataatagctca
gtgtgctgcccagaacaaaacgtgtctgtcattgtggggagcttatgaatgtgtatgtgctaagcaccatgagccatcag
gacagtcttgtgtacagaagaattactgcgctttgctctccccttgtcaccatctatcaacgtgccttaacaacgccaaa
actgaacacggctatgtttgcatctgtcctcccgagatggagggacgcatttgtaacattgccagacaaacgcctgttcc
tcctgatgacggggatgatggttggatcgtacccgtagttatagtgctttgcttattgatcctgatcataataatagtag
taggaatcatatttggaaggaaactttgttcaccagcgtcttctgatgccagaggattcgtggatttagagaaggaagat
tatgatatccgagaaaatattgtaaactacgatgaagagggggccggtgaattcgataatgatgcctttgacatcagcag
actgagaaaaccggcagatttgatgacacgaatggatagacccgatttaatggcaaccaatgaaagaccgcttaaatctg
gtgcaccaccaggaggccaagttggtgatttcatcgaggatcggttacaggatgccgacgacgatcccagcgcaccgccg
cacgataccaccagaaatttcgactacgagggtggaggcagtgatgcagggtctctgagttcactcaatactacaacgtc
agacggagaccaagattatgactatctcaataactggggtcccaaatttgccaagcttgctgatatgtataataattatg
aagattcagaatga

Protein
Protein IDpfu_aug2.0_554.1_14300.t1
Definition-
>pfu_aug2.0_554.1_14300.t1
MAPATGVRTYLCLCLNFVFCMLQFLPQTYTKSVLTVPHDAEPGYFISQIACTRPEVRIRTFGENSKEFYDKFHITNTGVL
VVKSTLSLSSDIDKTYYFSAYQNRRCFDRVKSHDNFIIHVRNSRKVVHFSKRLYSFRLLKSQSGVTVVQNGELIRYNHDN
HIPDDRVKFFLKGTSAKYFSVVEVSPKSLRIEASSSFDISTSRILHFRLFAEYNNAILGVVDINIIALPQENIDQPLSVQ
SPQPNHVQSQARVHSARPSVLVVNFDQTPNGGRLESQTGLRRVRRQTGIPTSTLSFDVNETATGRLFTVDPGVPPGTVYA
FNLTEATPQNIFSVDSDGNVSLRPGERLQYDFDGTRTYTISLEVISGSEVLRRVIVTLNVLNVNDENPYFTTRPTPYLAT
IPEQAEARLKVLQLQATDPDGGSIVYFIPGMLSDDSVLPQNSFETTDNNGNKVKIEAINFQERLGGTIQYTVYENVNTKS
TRFAVEDGNLKTLQPLDYETDPHSFTLTVMALDSYTGLSSIAQTLPKGSIVTTVSASDKDANTNISYTVTNPLFAVPTSG
NGQTGNVIVNGELDYDKTPRNRYEFDIIATDNGINPYPRNATARIIVNLINENDQDPKFDDNLVTSLVNNTAGGTTIFTV
RATDEDGDGITYSFQDDGSCCASAQPRSSSATVVINIIDAVNLKPNFVNCASYASTVLEDQEPGAVVTKVSATDQNRGEN
GVVEYYIIEDQKNTAALFSINNMTGELVTSARLDRETQSSRNLFITVRAVDRGNPPLDDYCTFAITVGDVNDNDPIFRSN
QYTGQILKAASVGTVVLTVQADDSDLGMNAAIQYSITSNPGDYFRMDKDTGEISVNRSLNTASNNVVLSVEAKDQGSQPR
SSTSTVIITVSTDPNVQPPRWTEINPLFQVAENADLNYIVGTLTAENRIADISDPGLDFNIVGLNNRLSQVDPSGNFIIA
KVSGAESVNIKINKILDYETKQEYTITIRASNRAGGNGIFSDNVVRIKVQDVNDVNPEFQNINPDSGKIDIYVKENSPVG
TVVSGIVATDGDLTAPFNETKYSLLNTNGRFNIDRVTGVITTRQVFDREATSDDSSKYYYVSAIAVDGANSSKPGTNGPN
TGSVGVQIIIQDENDNSPYFEQSLYTASVQEDSFIGSSIVTVAAKDDDDPKFTTFTYTLEGSSLFDVNRRTGTIRVAGNL
DYETPPNTYTLTLTVDDGKYSNRTNVQITIIDTNDNSPVFDNDTYIIRTITENEDYTNRPPILKVHATDPDTERDSGMEY
EIAQGDSVITSLFSVNRTTGDLSLRGSLDRDRPNGPIDEPGSSTRLTGYATVQVFPIDVNDNDPFFLTSSLTASVREMSA
VGVSVMTVKAEDYDAGQNAELTYNIVDGSQTPREAFRMNSDGSVFTTVNNLDRETNPTYYFEVVASDNGVPKRSTTATAT
VNIKDINDNSPRFSQRKPDYEKAEQRNFNFSVIVTDTIYSDTAFVVIEVLDVNDEIPNITPAQIEVERDENVPVNTTLAT
FTAVDADVDPNNGAFDFFISGKPIDEMPNFYFSIDANGVVRVKNPLDYEKISTHIVKILAIDRGLPPQTGTATLTVRLNN
INDNAPNLREDTVSFKENTPPAIQDKVYIYAEDPDGSPFAGPFTIGEGNCAPGNNACDNFNVVFSPSQDRAEIVPLSQFD
REEKLFYELPIVMSDMRTATGADAAKRLTGTSTLTIQISDENDNPSSDGTQNIHVYNYKGMFANIFIGSAHYEDRDDDRA
DKQFSLIGSSNYFNVSQAGGNIMMLAHVPSGRHTLAIRVTETNSRAPDFRKSVRSIVTIYIEDLPEEAPYKSGSVRLTGE
ENEKNPTSKAQIISVTDTEVDGVKYCDVRYAALGSPYYPASKVDGIVEKDKDQFSDTLGNGASIAMVSIDMCLREICEGG
GCHNKLIVKDEPNLVDANGSSFVGVATEVMADCNCPADFNGPRCQQTSLGFDGTGYALFETLRQCENSVTSIEFITLNEN
ALIMYNGPVRALQALDPEDFFVLQMRAGYPELTINHGTGSLTLSVNGRDAQNNLKMAKLNDGKWHQIDIRRQGKVVTLTV
DNCLSADNVEGAVQDRSPCEATGATKGENKYLNINSQLQLGGRYAFPRYPSNILSAKFRGCMRNFRHNGELYDLYTKNFY
DGIKDGCPEEDIVCGKNSANARKCENGICEMTEFPNPPSNPGASVCICNPGYRGSLCQDATTVRDFRTDSFMDWQLTNDF
INSLSTRKLDIQLQYRSRDRDGMIFHVQAQEGTEFMRLEIIDNILQVLYNFGDENRFLQLSEISASDGAWHTVYIKRRGQ
SLVLQLDGGEGDRYAEMNSNSLYQEMAIKGDQIYAGAQVSYEHTATIDSNNKRDFSSSCMNDIRLNQEWFPMTLSENSQS
TKVRLQRDVNTNPGCVREDCTLNIIAQCAAQNKTCLSLWGAYECVCAKHHEPSGQSCVQKNYCALLSPCHHLSTCLNNAK
TEHGYVCICPPEMEGRICNIARQTPVPPDDGDDGWIVPVVIVLCLLILIIIIVVGIIFGRKLCSPASSDARGFVDLEKED
YDIRENIVNYDEEGAGEFDNDAFDISRLRKPADLMTRMDRPDLMATNERPLKSGAPPGGQVGDFIEDRLQDADDDPSAPP
HDTTRNFDYEGGGSDAGSLSSLNTTTSDGDQDYDYLNNWGPKFAKLADMYNNYEDSE

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