Gene
| Gene Model ID | pfu_aug2.0_554.1_14304 |
|---|---|
| Locus | scaffold554.1 : 189574 ... 223656 : + |
| To GenomeBrowser | scaffold554.1:189574..223656 |
| Genes list of scaffold | scaffold554.1 |
| Synonym | pfu_aug1.0_23034.1_33316 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| two-pore calcium channel 1 | GO:0005216 GO:0006811 GO:0016020 GO:0055085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_554.1_14304.t1 | 3 | 1 | Ion_trans | 124 | 155 | 1.3e-24 | 86.5 | 0.031 | 230.0 | 0.8 |
| pfu_aug2.0_554.1_14304.t1 | 3 | 2 | Ion_trans | 167 | 204 | 1.3e-24 | 86.5 | 8.1e-06 | 0.06 | 12.5 |
| pfu_aug2.0_554.1_14304.t1 | 3 | 3 | Ion_trans | 295 | 433 | 1.3e-24 | 86.5 | 4.9e-27 | 3.6e-23 | 81.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_554.1_14304.t1 | gi|676466982|ref|XP_009057741.1| | hypothetical protein LOTGIDRAFT_122118, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_554.1_14304.t1 | gi|524864772|ref|XP_005089220.1| | PREDICTED: two pore calcium channel protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_554.1_14304.t1 | gi|704254845|ref|XP_010149098.1| | PREDICTED: two pore calcium channel protein 1, partial [Eurypyga helias] | 0.0 |
| pfu_aug2.0_554.1_14304.t1 | gi|269993229|emb|CBI63263.1| | two-pore channel 1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_554.1_14304.t1 | gi|612013964|ref|XP_007490068.1| | PREDICTED: two pore calcium channel protein 1 isoform X3 [Monodelphis domestica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_554.1_14304.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_554.1_14304.t1 atgacaacagaagatgtcagtcacataagaataagtgctgaaagggataggacttcaataaatgatggtgaatatgacat tgtcaatgaatctggaaacatggggtatggactcccctcctgttcaggcagggtaacgaatcgtaaactatgggaactca attaccaggaggcagctatttttttgcaggaaggagaaaataacgataaatataacactcatccccggagccatgaagcc ttaccagcctatcagatggcacaccacaagttattctatctcatggatttattcgcagctctgttggttctatttttagc agcatgtgaacaaccagcagtgcctttccttatgcttcctgtgggaagtgttaccctggtcatcatgtttatagaatcgg tagtggtccttatacgacaaacaaaccatttccgagtcactcgagctctgagaccgctatttctcctggatacatactac tgtagaggagtacgcagttacccagacgtgatgatgccggcttatacagagtccagatggaacgctgccttctttatcgt gtatttagcgctagaactctactttctcatgaacttgcttttggctgtcgtatatgacacattttcaaacctggagaaaa gaaaagtgaagactttatttttccataagagagtaggttgtcaacatgccttcaaactgctggtcactaagaagactaaa ttagaggaaatggaaatctggtcttccaagtttaaagaacctctcaaaaaggcatttcaaagtgctgtgatagccgctaa ttttgtgtggattctagtcgagacagcaaagctctcaaataacagtgtggatgtacggagctacaacttcacagccacct gggcctctgttgtttttatatgtatatatacgttagaagctacgctgaaaatcttagccaagggaccacaggagtatttt actacaggatgggatgtgtttgatttccttgttacgtttaccagtgtgataggcctattaggagcatactttgatacaac attttattacatcacagtgctacggcctttcagacttctcaggcttttcaaaattaaaaggacatacagggatattttgg ggacactatttgtcctcttctcaagattaacaagtttaatggttgtgatctgtttggtgtattatttctttgccattatt ggaatggaggtcttccacaatgtaaacctcagaaattgttgcaagaacaccagtgtagaggatttctaccagtataccaa tgaaacaaattatttaggatattactacttaaacaactttgataatatactcatatcgggagacaatgccaagcagaaag tccacatctacctatctaacgaagagaagacgatgtgtgaacaccccgatcatgtgatcagtggacagtatatagcacta caggctgacgaagcagacaaaaacctttctcatgcatacaaaggagaaaggtacagaagtaaagatgacttcaagctaca gatgtacagtgatgaagttgtgagatggcttgaagaagatcagaaccagagaaacgacaccatccaggatatgacggagc tacgacatcgacagcggccaaacgccaacctggctcatgtagaatcggaagatgacgtaatccctcggtcaagtttctca acaagcgtgacggacgatgaattcctcctggtggaggccccatcttga |
|
Protein
| Protein ID | pfu_aug2.0_554.1_14304.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_554.1_14304.t1 MTTEDVSHIRISAERDRTSINDGEYDIVNESGNMGYGLPSCSGRVTNRKLWELNYQEAAIFLQEGENNDKYNTHPRSHEA LPAYQMAHHKLFYLMDLFAALLVLFLAACEQPAVPFLMLPVGSVTLVIMFIESVVVLIRQTNHFRVTRALRPLFLLDTYY CRGVRSYPDVMMPAYTESRWNAAFFIVYLALELYFLMNLLLAVVYDTFSNLEKRKVKTLFFHKRVGCQHAFKLLVTKKTK LEEMEIWSSKFKEPLKKAFQSAVIAANFVWILVETAKLSNNSVDVRSYNFTATWASVVFICIYTLEATLKILAKGPQEYF TTGWDVFDFLVTFTSVIGLLGAYFDTTFYYITVLRPFRLLRLFKIKRTYRDILGTLFVLFSRLTSLMVVICLVYYFFAII GMEVFHNVNLRNCCKNTSVEDFYQYTNETNYLGYYYLNNFDNILISGDNAKQKVHIYLSNEEKTMCEHPDHVISGQYIAL QADEADKNLSHAYKGERYRSKDDFKLQMYSDEVVRWLEEDQNQRNDTIQDMTELRHRQRPNANLAHVESEDDVIPRSSFS TSVTDDEFLLVEAPS |
|