Gene
| Gene Model ID | pfu_aug2.0_554.1_14305 |
|---|---|
| Locus | scaffold554.1 : 232084 ... 234518 : + |
| To GenomeBrowser | scaffold554.1:232084..234518 |
| Genes list of scaffold | scaffold554.1 |
| Synonym | pfu_aug1.0_4599.1_59551 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase ii subunit rpb9-like | GO:0001193 GO:0003677 GO:0003899 GO:0005665 GO:0006283 GO:0006367 GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_554.1_14305.t1 | 2 | 1 | RNA_POL_M_15KD | 1 | 28 | 4.4e-08 | 32.6 | 3.0e-11 | 4.4e-08 | 32.6 |
| pfu_aug2.0_554.1_14305.t1 | 2 | 1 | TFIIS_C | 9 | 23 | 4.5e-13 | 48.5 | 0.0044 | 6.5 | 6.4 |
| pfu_aug2.0_554.1_14305.t1 | 2 | 2 | TFIIS_C | 62 | 102 | 4.5e-13 | 48.5 | 1.5e-14 | 2.2e-11 | 43.2 |
| pfu_aug2.0_554.1_14305.t1 | 2 | 2 | RNA_POL_M_15KD | 64 | 67 | 4.4e-08 | 32.6 | 0.71 | 1100.0 | -0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_554.1_14305.t1 | gi|524874053|ref|XP_005093768.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_554.1_14305.t1 | gi|524874051|ref|XP_005093767.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_554.1_14305.t1 | gi|676489172|ref|XP_009064851.1| | hypothetical protein LOTGIDRAFT_132099 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_554.1_14305.t1 | gi|742243531|ref|XP_010863283.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB9 isoform X2 [Esox lucius] | 0.0 |
| pfu_aug2.0_554.1_14305.t1 | gi|291221415|ref|XP_002730714.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_554.1_14305.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_554.1_14305.t1 atgttatatccaaaggaggataaggaaaacaaaatattactatatgcgtgccgtaactgtgattaccaacaggttgctga taatccctgcatttacgtcaacaaaatcacacatgaagtcgatgagttaacccagattataggagacgtgattgccgacc ctacgttaccgaggacagaggatcatccatgtcctaagtgtgcccacaaagagtctgtcttcttccagagccacagtaca aaagctgaggagggaatgcggttgtattatgtatgtacaaattctcagtgtgtacacagatggacagaaaaactctcatg a |
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Protein
| Protein ID | pfu_aug2.0_554.1_14305.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_554.1_14305.t1 MLYPKEDKENKILLYACRNCDYQQVADNPCIYVNKITHEVDELTQIIGDVIADPTLPRTEDHPCPKCAHKESVFFQSHST KAEEGMRLYYVCTNSQCVHRWTEKLS |
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