Gene
| Gene Model ID | pfu_aug2.0_556.1_20899 |
|---|---|
| Locus | scaffold556.1 : 29436 ... 41285 : - |
| To GenomeBrowser | scaffold556.1:29436..41285 |
| Genes list of scaffold | scaffold556.1 |
| Synonym | pfu_aug1.0_11890.1_39250 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transmembrane protein 17b-like | GO:0007224 GO:0036038 GO:0042384 GO:0060170 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_556.1_20899.t1 | 1 | 1 | Transmemb_17 | 2 | 88 | 7.9e-22 | 77.6 | 3.2e-25 | 1.2e-21 | 77.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_556.1_20899.t1 | gi|524892251|ref|XP_005102655.1| | PREDICTED: transmembrane protein 17-like [Aplysia californica] | 1.99965e-42 |
| pfu_aug2.0_556.1_20899.t1 | gi|390345609|ref|XP_794509.3| | 2.0e-38 | |
| pfu_aug2.0_556.1_20899.t1 | gi|260821097|ref|XP_002605870.1| | hypothetical protein BRAFLDRAFT_90803 [Branchiostoma floridae] | 6.0e-37 |
| pfu_aug2.0_556.1_20899.t1 | gi|695158853|ref|XP_009507524.1| | PREDICTED: transmembrane protein 17-like [Phalacrocorax carbo] | 4.0e-36 |
| pfu_aug2.0_556.1_20899.t1 | gi|499040482|ref|XP_004570866.1| | PREDICTED: transmembrane protein 17 [Maylandia zebra] | 5.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_556.1_20899.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_556.1_20899.t1 atgaaagaagtatatccctacctatcttcactctacaacatcatgttgattgccatatacatcgtctacacaattataga ggtcataaggttatatattggtttccttggcaaccttacagagagggtcccagagttggcgggatcctggctgttgacgt tgctcatccagttccctctcatcctcctcctagtgtttaatgacgaggctttattactaccgctagaacgtgctgttcac atcatagaagccttgtttgttctgtttgaagtgatttgtgggtattttgccgtaaggacgatggtgaattaccaagtgac aaagtttcatttacgtcaatttacagacttggaacaaatgccaacagaggagtactggcatgacaaatatgaatcttata catag |
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Protein
| Protein ID | pfu_aug2.0_556.1_20899.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_556.1_20899.t1 MKEVYPYLSSLYNIMLIAIYIVYTIIEVIRLYIGFLGNLTERVPELAGSWLLTLLIQFPLILLLVFNDEALLLPLERAVH IIEALFVLFEVICGYFAVRTMVNYQVTKFHLRQFTDLEQMPTEEYWHDKYESYT |
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