Gene
| Gene Model ID | pfu_aug2.0_557.1_24179 |
|---|---|
| Locus | scaffold557.1 : 229792 ... 247146 : + |
| To GenomeBrowser | scaffold557.1:229792..247146 |
| Genes list of scaffold | scaffold557.1 |
| Synonym | pfu_aug1.0_4931.1_30821 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_557.1_24179.t2 | 3 | 1 | IPPT | 14 | 90 | 6.4e-35 | 120.3 | 2.5e-23 | 7.4e-20 | 71.0 |
| pfu_aug2.0_557.1_24179.t2 | 3 | 2 | IPPT | 177 | 238 | 6.4e-35 | 120.3 | 7.4e-15 | 2.2e-11 | 43.2 |
| pfu_aug2.0_557.1_24179.t2 | 3 | 3 | IPPT | 263 | 284 | 6.4e-35 | 120.3 | 0.00022 | 0.66 | 8.9 |
| pfu_aug2.0_557.1_24179.t2 | 1 | 1 | zf-C2H2_jaz | 346 | 369 | 4.9e-07 | 29.7 | 4.0e-10 | 1.2e-06 | 28.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_557.1_24179.t2 | gi|557267985|ref|XP_006019358.1| | PREDICTED: tRNA dimethylallyltransferase, mitochondrial isoform X1 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_557.1_24179.t2 | gi|729755236|ref|XP_010574376.1| | PREDICTED: tRNA dimethylallyltransferase, mitochondrial isoform X3 [Haliaeetus leucocephalus] | 0.0 |
| pfu_aug2.0_557.1_24179.t2 | gi|759196807|ref|XP_011384840.1| | PREDICTED: tRNA dimethylallyltransferase, mitochondrial [Pteropus vampyrus] | 0.0 |
| pfu_aug2.0_557.1_24179.t2 | gi|586519287|ref|XP_006904022.1| | PREDICTED: tRNA dimethylallyltransferase, mitochondrial [Pteropus alecto] | 0.0 |
| pfu_aug2.0_557.1_24179.t2 | gi|564258180|ref|XP_006268027.1| | PREDICTED: tRNA dimethylallyltransferase, mitochondrial [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_557.1_24179.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_557.1_24179.t1 atggaccattcttcattaaactctgatacagactcacaaggatcaggtacagagcacaaacatgacgtgaagaaacggaa gtgtgataccacggagggagagctgatcgaaactgtgaaagataggagcaagaaatataaaaagagttacgaggaacagg acagtgtaacactacataaacgactccaggaagtggatcccgtgtcggctgagagattacattacaatgataaacggaaa ataatgagggccttagtggtgtatgatatgcatggtgtaccaatgagtgaagcattcaaagcccagaaaatagaccagga ctccaaacgtggaccattgaggtacaaagatgtctgtgtgttctgggtacagagtgacatgaaaggtatacagaacatga agctggtcacatatcagtacgctaagagacagatcaggcacatcagaaatatgttcctcagaagacagaacacagaactt cctccagtatacagtcttgactctacagacgtcaccaaatggaaagaaaatgtatatgacccagctataaacattctgac aagtgttatagagggcaagacacctgattatgaccccttacctgtagaaggcagtgaaaccaagtttacgaccaactatt gtgaattctgtgagaaaagatttgtagtggaacagcagtggcaagttcacattaagagcaagaggcattataggaagagg aactattataataataaaaagaaaaggttactgacagagacgtgtcaaatactggatgctgcagcttcaggacaaaaaag tcaaactgatgagagtatcgtaagcagttctgatgatgtcatgtgtgaaaaagacaaagatacaatcgataactctatgg gaaatacatgtgaaaatgctgagagaacatacgatgttactgtcagtgatacacaaataaatcatgatggagacaacaac aggcacatatgtgatccacaaacatcatcatgtacagatagtattaaaatagatgatgaccttgatgtgacctcagatag ttttgaaataggtgatgaccttgatttgactttagataatgtgaagaaaagtgaacagttaagtaacattggtaaagaaa caactcccgacatgctgactgtagaaagtcacgatactaaagaagatgtgaatgcatctttacaatga |
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| Transcript ID | pfu_aug2.0_557.1_24179.t2 |
| Definition | - |
>pfu_aug2.0_557.1_24179.t2 atggtttaccctcatttatttcatattttgtttttaccacagatatacaaaggattggacattgtaaccaacaaagtgac cagagaagaactacagcaatgccctcatcatatgattgattatgtctctccactacaggaaaaacacaccattgtggagt tcagagacaaagctgtccctattatcaacaatttactacagagaaagattctacctatcatagtgggaggtaccaactac tatatagaggccttactctacaacttccttctaagccagaatgatattaaaaaggcaagaaatataggacccaaactaga acttcccaaaaactacgagaacaattctgaagctgagaaagcctgtaaacaaacagtaggtgaggaagatggagaaataa tggaccattcttcattaaactctgatacagactcacaaggatcaggtacagagcacaaacatgacgtgaagaaacggaag tgtgataccacggagggagagctgatcgaaactgtgaaagataggagcaagaaatataaaaagagttacgaggaacagga cagtgtaacactacataaacgactccaggaagtggatcccgtgtcggctgagagattacattacaatgataaacggaaaa taatgagggccttagtggtgtatgatatgcatggtgtaccaatgagtgaagcattcaaagcccagaaaatagaccaggac tccaaacgtggaccattgaggtacaaagatgtctgtgtgttctgggtacagagtgacatgaaaggtatacagaacatgaa gctggtcacatatcagtacgctaagagacagatcaggcacatcagaaatatgttcctcagaagacagaacacagaacttc ctccagtatacagtcttgactctacagacgtcaccaaatggaaagaaaatgtatatgacccagctataaacattctgaca agtgttatagagggcaagacacctgattatgaccccttacctgtagaaggcagtgaaaccaagtttacgaccaactattg tgaattctgtgagaaaagatttgtagtggaacagcagtggcaagttcacattaagagcaagaggcattataggaagagga actattataataataaaaagaaaaggttactgacagagacgtgtcaaatactggatgctgcagcttcaggacaaaaaagt caaactgatgagagtatcgtaagcagttctgatgatgtcatgtgtgaaaaagacaaagatacaatcgataactctatggg aaatacatgtgaaaatgctgagagaacatacgatgttactgtcagtgatacacaaataaatcatgatggagacaacaaca ggcacatatgtgatccacaaacatcatcatgtacagatagtattaaaatagatgatgaccttgatgtgacctcagatagt tttgaaataggtgatgaccttgatttgactttagataatgtgaagaaaagtgaacagttaagtaacattggtaaagaaac aactcccgacatgctgactgtagaaagtcacgatactaaagaagatgtgaatgcatctttacaatga |
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Protein
| Protein ID | pfu_aug2.0_557.1_24179.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_557.1_24179.t1 MDHSSLNSDTDSQGSGTEHKHDVKKRKCDTTEGELIETVKDRSKKYKKSYEEQDSVTLHKRLQEVDPVSAERLHYNDKRK IMRALVVYDMHGVPMSEAFKAQKIDQDSKRGPLRYKDVCVFWVQSDMKGIQNMKLVTYQYAKRQIRHIRNMFLRRQNTEL PPVYSLDSTDVTKWKENVYDPAINILTSVIEGKTPDYDPLPVEGSETKFTTNYCEFCEKRFVVEQQWQVHIKSKRHYRKR NYYNNKKKRLLTETCQILDAAASGQKSQTDESIVSSSDDVMCEKDKDTIDNSMGNTCENAERTYDVTVSDTQINHDGDNN RHICDPQTSSCTDSIKIDDDLDVTSDSFEIGDDLDLTLDNVKKSEQLSNIGKETTPDMLTVESHDTKEDVNASLQ |
|
| Protein ID | pfu_aug2.0_557.1_24179.t2 |
| Definition | - |
>pfu_aug2.0_557.1_24179.t2 MVYPHLFHILFLPQIYKGLDIVTNKVTREELQQCPHHMIDYVSPLQEKHTIVEFRDKAVPIINNLLQRKILPIIVGGTNY YIEALLYNFLLSQNDIKKARNIGPKLELPKNYENNSEAEKACKQTVGEEDGEIMDHSSLNSDTDSQGSGTEHKHDVKKRK CDTTEGELIETVKDRSKKYKKSYEEQDSVTLHKRLQEVDPVSAERLHYNDKRKIMRALVVYDMHGVPMSEAFKAQKIDQD SKRGPLRYKDVCVFWVQSDMKGIQNMKLVTYQYAKRQIRHIRNMFLRRQNTELPPVYSLDSTDVTKWKENVYDPAINILT SVIEGKTPDYDPLPVEGSETKFTTNYCEFCEKRFVVEQQWQVHIKSKRHYRKRNYYNNKKKRLLTETCQILDAAASGQKS QTDESIVSSSDDVMCEKDKDTIDNSMGNTCENAERTYDVTVSDTQINHDGDNNRHICDPQTSSCTDSIKIDDDLDVTSDS FEIGDDLDLTLDNVKKSEQLSNIGKETTPDMLTVESHDTKEDVNASLQ |
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