Gene
| Gene Model ID | pfu_aug2.0_56.1_20126 |
|---|---|
| Locus | scaffold56.1 : 131816 ... 164630 : + |
| To GenomeBrowser | scaffold56.1:131816..164630 |
| Genes list of scaffold | scaffold56.1 |
| Synonym | pfu_aug1.0_4615.1_16446 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase trip12 | GO:0004842 GO:0005654 GO:0009790 GO:0042787 GO:0046966 GO:0070735 GO:1901315 GO:2000780 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_56.1_20126.t1 | 2 | 1 | HECT | 638 | 681 | 1.6e-28 | 99.8 | 0.012 | 58.0 | 2.6 |
| pfu_aug2.0_56.1_20126.t1 | 2 | 2 | HECT | 1465 | 1658 | 1.6e-28 | 99.8 | 1.2e-30 | 5.7e-27 | 94.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_56.1_20126.t1 | gi|119591311|gb|EAW70905.1| | thyroid hormone receptor interactor 12, isoform CRA_j [Homo sapiens] | 0.0 |
| pfu_aug2.0_56.1_20126.t1 | gi|183985686|gb|AAI66201.1| | LOC100158539 protein [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_56.1_20126.t1 | gi|585177730|ref|XP_006740594.1| | PREDICTED: E3 ubiquitin-protein ligase TRIP12 [Leptonychotes weddellii] | 0.0 |
| pfu_aug2.0_56.1_20126.t1 | gi|148670227|gb|EDL02174.1| | thyroid hormone receptor interactor 12, isoform CRA_d [Mus musculus] | 0.0 |
| pfu_aug2.0_56.1_20126.t1 | gi|507641732|ref|XP_004701720.1| | PREDICTED: E3 ubiquitin-protein ligase TRIP12 isoform X1 [Echinops telfairi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_56.1_20126.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_56.1_20126.t1 atgcaacattttcacacaaatagtgatttctccctgaaaattcaaacaattattttgttaanttctattgacaatgattc aaataggaaactttcatgttttcatcatccaagtgagcaagactcaaacacatctcttagcaacagaaggggtagctcgg gaaatttcagaaaacgtaccttgtcagcttcagcggcagagtacagttgtactatttgtaaaacagtcaaacaagcagag agagggcactctgggaagtcatcacaaaaaccaaaggaaaatttggtgaataatacccttgttgctggattggaaagaca aactcgaaagagacaaaaatctcaacaaagtcagagatctcgtaaagactctttagattctttaggaagtgtaggatcta gtactgccagtagtagaagagcttcttcaactggtgcaacagagagaactttatctagcagaaagaactcatctggacca agaggtaggtctggaaggagaaattcacttgattctacaggaagtgagaggaaaactccaacacgacagagatccattga aagtaatcaaaagtcagaggacaatatttacaaagtctctaataatttgcgttcaaactctaatgcaacaattgttgctg gtatcccaattgtaaacagtagaacagttaaggagcagaaaaataagacaactttaagttcagaaagcaagaagcaaaaa agaggtaaaagcaaaaagaaagcaagtcaaatttctccatccacaacgtcaacaaatagtccatcggataatccgtctac atctacacgtacatcttcaaagcggggtcatcaaaggtcatcgtcaaggaagacaaaagtgacagacaaccccgattttc aacctcccatcaaaaaggcaaaagggaggccaactggttcatcaactaagaaagacaaaagtcatctagaatctacttcc ccaatacctgatcattcttcttccttagcgccaaagcttgatagcttacggcgaaccactaaaaataagaaaacgggatc ttgtgccagcagcagtggtcgacgttcatcgtcattgtcaaagcgtcagggagtaagtggaagtagcacacgtggcggag cgtgtgtaaacagcacagacacttcatcagggagtcgaggtagtaaatcacagacaggaacaagtctaatgtctggtcag gagggtagtaatgaagctagtaatagtggctccagaaacgatgatgaggcaacacagaatcctgctgcctcaagctcggg agctactgcagcattagcgtcggagagtgagacagaggaagcagacatgggtcgtctccaggctttgttagaggctcgag gtttgccgtcacagctatttggtgctctgggacccagaatgcaccagctcttacacagaaccatgggaggtggaacatct aataaagcccagcagttgatcagtggtttacagtccactggtaacgaagatcagcagctgactgcagccattgaaatgtg tcagctattggtaatggggaatgaagacacgttagctggttttcctgtgaagcaggcagttccggccttgatcacacttc tacagatggaacataactttgacatgatgaatcacgcgtgtcgagctctgacctacatgatggaagctctacccagatca tccgctgtcgtagtcgatgctgtgccagtatttctggaaaagttgcgagctattcagtgtatggatgttgcggaacagtc acttaccgctttagaaatgctgtcaagacgtcatagtaaagctatacttcaagctggaggaatccaggcgtgtctgatgt tcttagatttcttcagtatatctgcccagaggagtgccttagctataacggctaactgtgtacaaaacatgacagcagag gagttccactacatccgtgaatcattatcgttactcagcaccaagcttacacatcaggataagaagtccgtggagagctg ctgtctctgtttctgtagattggtagataacttccagacagaccagaggactctcaaagaaatatctgtacatggattac tcactaatatacaacaactgcttgttgtcaatcctccagtaatcagtacagggacatttgtaatggtgatcagaatgctg gccataatgtgttctagctgccctgacctagctgtcatacttctaaaacaaaaaattgcggatacgctttgttacctcct tgttggaacttcagaacaacagactggacagaatattgaacttattgccagaacaccccaggagctctatgaaatagtgt gcttaattggggagctgatgccaaagttgccgtcagatgggatgtttgctatagatactatgttaaggaagggatctacc actcagatagatgctgtagtctggcagtggagagatgatcggggaatctggcattcatatacaccaatcgacagcaaaat tatagaggaattctcaatcatgatgaaactccaaactctatacgagtgtcaaggatctacctcctcctcctccacctcct tgtcgacagcctcagagatcaacctcgagcagtgtgactcccgagctgaggtactgaaggaggacatgcagctggcatcc atgtttatacagactctgtttgctgtactgtacgaggtctatagctcatctgctggacctacagtcagacacaagtgttt acagacattgttaaggatgatatactatgctgaagccaatcttctcaaagaaattctcaaatctcaaccagtttcaaggt atgtgtgagtaatgcatcaaatacagaaactgacagaatcggatccctctgccgagtccccagtcaaacctacggtaccg tcacctacaacgggagtgaacaccgcaacaccatccgtgtctggatccaccacaagtctcaccagcaccacatcatcaag ctctcacagctcagaaagtctcagtatggctgcctcaatagacacgcccactttacctgaggatcaaaagacatcaacac aaatgaggctaagtgatgttttaaagagaaagaaggcccctaaaagatcactgaataggaaaggtaaaaccactgaagat tcggcagtggatcctaccccaaaaacaacgcacagtagtagggcaactagtaaaaccaagtctgcatcatcttcaaaaga tggtaaatctggtgcttcatctaaaatgtctttcctgccgagcttgaatccacgttcctggggaaagtttgccagttctg ggtcatcagacaggtccagcgggtctaaagtcggactgtctaaggcccctgatgttttacacatagcccagctagacatg gatgaagttccctccctctcacctctagtcagtaaacttattggatgtctacatcagttagaacaagtcaaagttcacga cctccctggtggaagtacttctagtggtagaggatctaatgctcttagattcttcaatacacatcagcttaagtgtaatt tacaaaggcatccgtcatgtacaactctgagacagtggaagggtggacctgtaaaaatagacccgctggctctggtacag gccatagaacgatatctagtcatcaggggatatggcagacttaaacctgatggagatgatgatctcagtgatgatgataa ttcagatgatgatatagacgacacaatggtaagtattgataattcagatgataatttagatgactcaatggctgcagtgt tcataagtcagggtacagccagacataagttagagttcctgattggagagaggatcttgccctacaatatgaccgtttac caggccgtcaaaaactacagtaaccctggagagagggatgccagcgagacggacacggactctgagaatccactaggaca tgctagtatatgggtacagactcatacaatatggtatcgcacggctcctgaggcagaggaagcgtcagctaccagcccta aaaagacaaaggccgatagtaaagtcaccaaaacctcacttagacgcaaaacagatgaactatggaatgaagctgttaat gaaaattatttttattgtagccctttcttgtttccctttgatactcggcaactcctgttctatgccacaacatttgacag agaccgagctttgatgcgacttcaggataacactggtgacacaagtattaacgacaatagtgagagagtggctccgaggc tggatagaaggaggaaaatggtcagcagaacagatttgttgaaacaagcagagaaagtaatggaagatctgggtaactcc agggcgcttctggaaattcagtatgaaaatgaggtagggacaggtttaggacctacactggagttttacgccctgacatc aaaggaactacagaggggagatctagaactgtggagaggtgatactatatcagagaaaaattcatctggtacagttacag atacccagtattatcactcggctacgggtctcttccctgctccactaccacgtaatgctaaggcagctactgtgaataag gtcaaagccaagtttaaattcctaggaaagtttatggctaaagctctaatggactctaggatgttggacatgcccctttg ccttgtattttacaagtggatattaggacaggaacacagtttgacgtccagtgatttacagtacattgaccctgtgatag caaagtctttccagcagttagaagatgttcttcgtcagaaacaaagaattttagcggataaatctcatactgaggagagt cggcagttggcattagacagcctgactatggatggcagcaatatagaagacctagatctggactttacgttacctggaca tcctaatatagaactgaagaaaaacggcaaagacatcttagtcactctggaaaacctggaggaatacctacaggcatgtg aaaatcttcatttaagacattttccctaa |
|
Protein
| Protein ID | pfu_aug2.0_56.1_20126.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_56.1_20126.t1 MQHFHTNSDFSLKIQTIILLXSIDNDSNRKLSCFHHPSEQDSNTSLSNRRGSSGNFRKRTLSASAAEYSCTICKTVKQAE RGHSGKSSQKPKENLVNNTLVAGLERQTRKRQKSQQSQRSRKDSLDSLGSVGSSTASSRRASSTGATERTLSSRKNSSGP RGRSGRRNSLDSTGSERKTPTRQRSIESNQKSEDNIYKVSNNLRSNSNATIVAGIPIVNSRTVKEQKNKTTLSSESKKQK RGKSKKKASQISPSTTSTNSPSDNPSTSTRTSSKRGHQRSSSRKTKVTDNPDFQPPIKKAKGRPTGSSTKKDKSHLESTS PIPDHSSSLAPKLDSLRRTTKNKKTGSCASSSGRRSSSLSKRQGVSGSSTRGGACVNSTDTSSGSRGSKSQTGTSLMSGQ EGSNEASNSGSRNDDEATQNPAASSSGATAALASESETEEADMGRLQALLEARGLPSQLFGALGPRMHQLLHRTMGGGTS NKAQQLISGLQSTGNEDQQLTAAIEMCQLLVMGNEDTLAGFPVKQAVPALITLLQMEHNFDMMNHACRALTYMMEALPRS SAVVVDAVPVFLEKLRAIQCMDVAEQSLTALEMLSRRHSKAILQAGGIQACLMFLDFFSISAQRSALAITANCVQNMTAE EFHYIRESLSLLSTKLTHQDKKSVESCCLCFCRLVDNFQTDQRTLKEISVHGLLTNIQQLLVVNPPVISTGTFVMVIRML AIMCSSCPDLAVILLKQKIADTLCYLLVGTSEQQTGQNIELIARTPQELYEIVCLIGELMPKLPSDGMFAIDTMLRKGST TQIDAVVWQWRDDRGIWHSYTPIDSKIIEEFSIMMKLQTLYECQGSTSSSSTSLSTASEINLEQCDSRAEVLKEDMQLAS MFIQTLFAVLYEVYSSSAGPTVRHKCLQTLLRMIYYAEANLLKEILKSQPVSRYVXVMHQIQKLTESDPSAESPVKPTVP SPTTGVNTATPSVSGSTTSLTSTTSSSSHSSESLSMAASIDTPTLPEDQKTSTQMRLSDVLKRKKAPKRSLNRKGKTTED SAVDPTPKTTHSSRATSKTKSASSSKDGKSGASSKMSFLPSLNPRSWGKFASSGSSDRSSGSKVGLSKAPDVLHIAQLDM DEVPSLSPLVSKLIGCLHQLEQVKVHDLPGGSTSSGRGSNALRFFNTHQLKCNLQRHPSCTTLRQWKGGPVKIDPLALVQ AIERYLVIRGYGRLKPDGDDDLSDDDNSDDDIDDTMVSIDNSDDNLDDSMAAVFISQGTARHKLEFLIGERILPYNMTVY QAVKNYSNPGERDASETDTDSENPLGHASIWVQTHTIWYRTAPEAEEASATSPKKTKADSKVTKTSLRRKTDELWNEAVN ENYFYCSPFLFPFDTRQLLFYATTFDRDRALMRLQDNTGDTSINDNSERVAPRLDRRRKMVSRTDLLKQAEKVMEDLGNS RALLEIQYENEVGTGLGPTLEFYALTSKELQRGDLELWRGDTISEKNSSGTVTDTQYYHSATGLFPAPLPRNAKAATVNK VKAKFKFLGKFMAKALMDSRMLDMPLCLVFYKWILGQEHSLTSSDLQYIDPVIAKSFQQLEDVLRQKQRILADKSHTEES RQLALDSLTMDGSNIEDLDLDFTLPGHPNIELKKNGKDILVTLENLEEYLQACENLHLRHFP |
|