Gene
| Gene Model ID | pfu_aug2.0_56.1_20127 |
|---|---|
| Locus | scaffold56.1 : 164686 ... 165830 : + |
| To GenomeBrowser | scaffold56.1:164686..165830 |
| Genes list of scaffold | scaffold56.1 |
| Synonym | pfu_aug1.0_4615.1_16446 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase trip12-like | GO:0004842 GO:0005654 GO:0005737 GO:0008270 GO:0008766 GO:0009790 GO:0018169 GO:0042787 GO:0043773 GO:0043774 GO:0046966 GO:0070736 GO:0070737 GO:0070738 GO:0070740 GO:1901315 GO:2000780 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_56.1_20127.t1 | 1 | 1 | HECT | 2 | 115 | 8.30003e-41 | 140.1 | 5.60519e-45 | 9.10003e-41 | 140.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_56.1_20127.t1 | gi|119591302|gb|EAW70896.1| | thyroid hormone receptor interactor 12, isoform CRA_a [Homo sapiens] | 0.0 |
| pfu_aug2.0_56.1_20127.t1 | gi|704548142|ref|XP_010178835.1| | PREDICTED: E3 ubiquitin-protein ligase TRIP12-like [Mesitornis unicolor] | 0.0 |
| pfu_aug2.0_56.1_20127.t1 | gi|736304038|ref|XP_010794119.1| | PREDICTED: E3 ubiquitin-protein ligase TRIP12 [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_56.1_20127.t1 | gi|701308833|ref|XP_010015314.1| | PREDICTED: E3 ubiquitin-protein ligase TRIP12-like [Nestor notabilis] | 0.0 |
| pfu_aug2.0_56.1_20127.t1 | gi|148670229|gb|EDL02176.1| | thyroid hormone receptor interactor 12, isoform CRA_f [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_56.1_20127.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_56.1_20127.t1 atgttaatggaatgttgtcgaccagatcatgggtatactcatgacagccgagctgttaaattcctctttgagatacttag tttgtatgacgactcacaacaacgagagttcctacagttcgtaacgggatcccctcggctacctgtgggcggtttcagaa gtttaaatccacctctaaccattgtaagaaaatcctttgaaacaacggagaatcctgacaattttttaccgtctgtgatg acatgtgtgaattatctgaaactaccggactacacctctgtagaagtgatgcgcgagaaactggcggtagcttccaggga gggacaactctcctttcacttgtcatag |
|
Protein
| Protein ID | pfu_aug2.0_56.1_20127.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_56.1_20127.t1 MLMECCRPDHGYTHDSRAVKFLFEILSLYDDSQQREFLQFVTGSPRLPVGGFRSLNPPLTIVRKSFETTENPDNFLPSVM TCVNYLKLPDYTSVEVMREKLAVASREGQLSFHLS |
|