Gene
| Gene Model ID | pfu_aug2.0_56.1_20136 |
|---|---|
| Locus | scaffold56.1 : 349317 ... 373110 : + |
| To GenomeBrowser | scaffold56.1:349317..373110 |
| Genes list of scaffold | scaffold56.1 |
| Synonym | pfu_aug1.0_5843.1_67338 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_56.1_20136.t1 | 3 | 1 | I-set | 94 | 174 | 1.1e-31 | 108.5 | 1.5e-13 | 2.7e-10 | 39.9 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 1 | Ig_2 | 96 | 183 | 1.5e-22 | 79.4 | 4.6e-12 | 8.5e-09 | 35.4 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 1 | Ig_3 | 96 | 169 | 1.0e-18 | 67.5 | 5.7e-10 | 1.0e-06 | 29.0 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 1 | C2-set_2 | 96 | 156 | 1.9e-08 | 34.0 | 1.1e-05 | 0.021 | 14.7 |
| pfu_aug2.0_56.1_20136.t1 | 2 | 1 | V-set | 99 | 173 | 1.3e-11 | 44.3 | 6.3e-10 | 1.2e-06 | 28.4 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 1 | ig | 107 | 168 | 2.5e-13 | 49.9 | 5.7e-09 | 1.1e-05 | 25.5 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 2 | I-set | 195 | 241 | 1.1e-31 | 108.5 | 1.3e-05 | 0.024 | 14.4 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 2 | Ig_3 | 195 | 267 | 1.0e-18 | 67.5 | 0.00015 | 0.28 | 11.7 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 2 | Ig_2 | 198 | 251 | 1.5e-22 | 79.4 | 0.00022 | 0.41 | 10.8 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 2 | C2-set_2 | 204 | 263 | 1.9e-08 | 34.0 | 0.00051 | 0.95 | 9.4 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 2 | ig | 209 | 236 | 2.5e-13 | 49.9 | 0.2 | 380.0 | 1.3 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 3 | I-set | 277 | 363 | 1.1e-31 | 108.5 | 6.5e-17 | 1.2e-13 | 50.6 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 3 | Ig_2 | 286 | 362 | 1.5e-22 | 79.4 | 3.5e-10 | 6.5e-07 | 29.3 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 3 | Ig_3 | 292 | 350 | 1.0e-18 | 67.5 | 5.4e-08 | 0.0001 | 22.7 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 3 | ig | 296 | 347 | 2.5e-13 | 49.9 | 7.3e-07 | 0.0014 | 18.7 |
| pfu_aug2.0_56.1_20136.t1 | 3 | 3 | C2-set_2 | 301 | 317 | 1.9e-08 | 34.0 | 0.006 | 11.0 | 5.9 |
| pfu_aug2.0_56.1_20136.t1 | 2 | 2 | V-set | 328 | 355 | 1.3e-11 | 44.3 | 0.00055 | 1.0 | 9.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_56.1_20136.t1 | gi|571573175|ref|XP_006565869.1| | PREDICTED: neogenin isoform X5 [Apis mellifera] | 1.4013e-45 |
| pfu_aug2.0_56.1_20136.t1 | gi|571573177|ref|XP_006565870.1| | PREDICTED: neogenin isoform X6 [Apis mellifera] | 1.4013e-45 |
| pfu_aug2.0_56.1_20136.t1 | gi|571573179|ref|XP_006565871.1| | PREDICTED: neogenin isoform X7 [Apis mellifera] | 1.4013e-45 |
| pfu_aug2.0_56.1_20136.t1 | gi|571573171|ref|XP_006565867.1| | PREDICTED: neogenin isoform X3 [Apis mellifera] | 1.4013e-45 |
| pfu_aug2.0_56.1_20136.t1 | gi|571573173|ref|XP_006565868.1| | PREDICTED: neogenin isoform X4 [Apis mellifera] | 1.4013e-45 |
Transcript
| Transcript ID | pfu_aug2.0_56.1_20136.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_56.1_20136.t1 atgtctatacagacatcatatctcaactcagtcacaaagaaagtctacacagacatatctcaacttagtcacaaagaaag tctacacagacatcatttctcaactcaaaaaaaaaagaaagtcttcatagaagactcagtcctaaatcaatggaaaaacc ccaaccaatttgtttgctatcataaacaaggatttttttcttttataggtatagataaaatcacacatattattgttgta ctttcaggtgacagtatcttgccaaacttcagggatctttattttaccatagagcccagtaacgcgataacttcacgggg ggagagtgtagtactcagttgtcgtgtacagtcctccgtcacctcagtctccatcaaatggctcaaggacggcaaggtgt tagatgtcaggagggataggagacgaagtattctttccaatgggtcattacatatatcaccagttcagccccgtgatgac aggggaatgtaccagtgtcaagccacgctatccaacctagggaccatcattagtagaacagctcgattagatattgcttc ttccatcagaaagggaataactccatattttgtgcttaaaccaagggatactattgtagaagctggatcttctacaatcc tgttttgtggtgctaacggtaaaactaaggagggcaaacctcctaccatcacatggctcaaagatggattaactattgat ttcaggtggtgctccaatatttcacagatgaatagctttaattcaacagtaatttccgagtttaaaatgtcagagatgac gttcattgtaaaacaacaaccaataaaaccaagatttgtgcggaggctggtgaatgaggttgcccagcgtaattctgacc ttttccttcgctgtgatatctatggcatccccaaacctacgatatactgggtgaaaaatgggcaaaacatcacagaaaca ggctatattcaagtggtggaagacaagcacctaagaattctgggattgttaccgcgggatgctggactttaccagtgtat gggcagtaatccttacggatctgtacaaggtgttttacgccttacggtacaggatcctggtatgtataattttaacacat ataaaatatga |
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Protein
| Protein ID | pfu_aug2.0_56.1_20136.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_56.1_20136.t1 MSIQTSYLNSVTKKVYTDISQLSHKESLHRHHFSTQKKKKVFIEDSVLNQWKNPNQFVCYHKQGFFSFIGIDKITHIIVV LSGDSILPNFRDLYFTIEPSNAITSRGESVVLSCRVQSSVTSVSIKWLKDGKVLDVRRDRRRSILSNGSLHISPVQPRDD RGMYQCQATLSNLGTIISRTARLDIASSIRKGITPYFVLKPRDTIVEAGSSTILFCGANGKTKEGKPPTITWLKDGLTID FRWCSNISQMNSFNSTVISEFKMSEMTFIVKQQPIKPRFVRRLVNEVAQRNSDLFLRCDIYGIPKPTIYWVKNGQNITET GYIQVVEDKHLRILGLLPRDAGLYQCMGSNPYGSVQGVLRLTVQDPGMYNFNTYKI |
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