Gene
| Gene Model ID | pfu_aug2.0_56.1_20137 |
|---|---|
| Locus | scaffold56.1 : 374087 ... 386841 : + |
| To GenomeBrowser | scaffold56.1:374087..386841 |
| Genes list of scaffold | scaffold56.1 |
| Synonym | pfu_aug1.0_5843.1_67338 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_56.1_20137.t1 | 6 | 1 | fn3 | 41 | 121 | 0.0 | 238.6 | 4.7e-19 | 7.8e-16 | 57.9 |
| pfu_aug2.0_56.1_20137.t1 | 5 | 1 | Interfer-bind | 72 | 118 | 9.5e-16 | 57.7 | 8.5e-06 | 0.014 | 15.4 |
| pfu_aug2.0_56.1_20137.t1 | 6 | 2 | fn3 | 140 | 177 | 0.0 | 238.6 | 5.5e-07 | 0.00091 | 19.3 |
| pfu_aug2.0_56.1_20137.t1 | 6 | 3 | fn3 | 178 | 251 | 0.0 | 238.6 | 4.1e-16 | 6.8e-13 | 48.5 |
| pfu_aug2.0_56.1_20137.t1 | 5 | 2 | Interfer-bind | 197 | 250 | 9.5e-16 | 57.7 | 0.00043 | 0.7 | 9.9 |
| pfu_aug2.0_56.1_20137.t1 | 6 | 4 | fn3 | 270 | 351 | 0.0 | 238.6 | 3.7e-14 | 6.1e-11 | 42.3 |
| pfu_aug2.0_56.1_20137.t1 | 5 | 3 | Interfer-bind | 313 | 346 | 9.5e-16 | 57.7 | 0.0052 | 8.6 | 6.4 |
| pfu_aug2.0_56.1_20137.t1 | 6 | 5 | fn3 | 372 | 457 | 0.0 | 238.6 | 6.3e-11 | 1.0e-07 | 31.9 |
| pfu_aug2.0_56.1_20137.t1 | 5 | 4 | Interfer-bind | 389 | 458 | 9.5e-16 | 57.7 | 9.0e-06 | 0.015 | 15.3 |
| pfu_aug2.0_56.1_20137.t1 | 6 | 6 | fn3 | 471 | 559 | 0.0 | 238.6 | 1.6e-18 | 2.6e-15 | 56.3 |
| pfu_aug2.0_56.1_20137.t1 | 5 | 5 | Interfer-bind | 531 | 560 | 9.5e-16 | 57.7 | 0.047 | 77.0 | 3.3 |
| pfu_aug2.0_56.1_20137.t1 | 2 | 1 | Neogenin_C | 678 | 705 | 4.3e-12 | 46.2 | 0.004 | 6.5 | 6.2 |
| pfu_aug2.0_56.1_20137.t1 | 2 | 2 | Neogenin_C | 791 | 858 | 4.3e-12 | 46.2 | 2.6e-13 | 4.3e-10 | 39.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_56.1_20137.t1 | gi|524914173|ref|XP_005111905.1| | PREDICTED: neogenin-like, partial [Aplysia californica] | 0.0 |
| pfu_aug2.0_56.1_20137.t1 | gi|752870888|ref|XP_011252617.1| | PREDICTED: neogenin isoform X5 [Camponotus floridanus] | 0.0 |
| pfu_aug2.0_56.1_20137.t1 | gi|752870880|ref|XP_011252613.1| | PREDICTED: neogenin isoform X1 [Camponotus floridanus] | 0.0 |
| pfu_aug2.0_56.1_20137.t1 | gi|752870882|ref|XP_011252614.1| | PREDICTED: neogenin isoform X2 [Camponotus floridanus] | 0.0 |
| pfu_aug2.0_56.1_20137.t1 | gi|759049913|ref|XP_011334024.1| | PREDICTED: neogenin isoform X6 [Cerapachys biroi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_56.1_20137.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_56.1_20137.t1 atgcccttgcgtcctcagccaatcacatttatcacctcgccgctgatgcggctcggtaataaatgtgagccgcatcagcg gcgaggggcccagtacggggacatagccaaccttcccaccaagccacggaacctaactgcagctattgtgtctaagaggt ttgtgacactgaagtgggagtcaccattatcctcgggggctacatctattacagcttactctgtgttctggagggaaaga ggatcagaaagggagcgagtgttaaatacaacagagtctcatctagaagctaacatccaacatctaaagccaaacacaaa ctatgagttcagagtacaagcttacaatacctacggtcctagtcctaagtttgctagtctaacggttcttacagataaag atgttgatgtgcccagtcctgcagtaaatgttcgtgccacacccctctccccacactccatccttgttcagtgggatcca ccccagatgccaaaagggatcatcaccaagtacatacttatctactatgagagcctgattgtaagatgggagccaccacc cccggattctcagaatggtgtcatcacaggatacaagataagatacaagaagaggtcaggtgaagtgcgcggcagtaagt ctgtaacgacagatgggaatcgaaggctgtatgctctgacagacttagataagaactcagaataccaggtgaagatttca gctctgacggtcaatggtagtgggccagcctcggagagactgagagcaactacatataaagatgatcttgatgagtctgc agtccctcctcctccccaaaggataagagtaactccctatgcccattccatacgtgtatcatggtccagtcctaaccctg agtccaaggtccttgttagaggctacaccctagggtggggaaaaggcgtggctgatgactatcagaaagtcttggatgct gacactcatgtctacaccattgaacatctgcacccgtcatctgagtatgtgataacagtcagagcatttaacaaccgtgg tgatggccaaccaagatatcaaaccgccacaaccagcgaagaaacattccaagagaccatcacacctatgatgcctccag tcggtttgaaaaccatcgtcttgtcaccttccaccgtggttttaacatggtctgacacatctctgggaaccaatcaggtt gtacaggataaccggttttacactgtacggtacagagcagtgtctgactccggcagataccgattacttaactccaccga cctgaatgcacacattgacaacctacgaccaaacaccagatatgaatttgaggtcaaggtcattaaaggtcgcaggacaa gtgaatggagcatgaaggaggtcaataaaacaaaggaagctgcccctggatctgcacctagagatctgacaccaataccc aaagagaatgaccctacagctgtcactgttaactggcaaccaccagctaaacctaatggacaaattacaggttatctggt atactacaccactgatgctacacatgatgtcagggactgggtgtatgagggagtactcggtgatgagctctctgccacca tcagacacctcacactagataccacttactacttcaaggtacaggccaggaacagtaagggttacggaccaagttcacag accatcatgtacaaaactcctaccattgacggtaatggtggagggaaagtggacgcacctaaagaccctggcattgccaa tccaggtaatcgtatctggaattacagtcccactaatccaggctccgatgataagagtgagacagataagaagtcagatg gcggtgtcggaggtttgtcgacaggtatcattaacatcatcatcgcttccgttgtgggtaccacattctgtgtggttatt gtggtggtagctatcatatactgtaagaggagagataataacgacaggaataaaaggacgaatcagaatttgacccaatc tccaaacaaaggtaaacctcagggaagtgccaaaccagatgtactatggatcaatgacatagagatgaagaacgtagata aaccagatcggagcgagtccatgttaaccatgagtaatgccagtacgttacagagacgtagctctaacgagtaccgatca atggatgacttacctccatatcatcctgatatagagagaaattttggtccagatatgtattatcatcctccctcagagag tgaggagagagagcggttccttcccccaccccgccagcagggttcaggattgatacgccctaaacccactaaacctatga tgattccagtagatacccaaccaccacccagagaactgaaacctcagcaatccccgtacaagaaagctacgcctagtgtg tcaatcaaaccacgtgccatacctattatatctacccctaaagctccagatgtcgtgttaaaggccggcaaggagataga tccagatatacagaaatcagtgagtactgaggaacttacagcagaaatggcaaatttagactgtcttatgaaagacttga atgcaatcacacaacagaattttgaatgctag |
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Protein
| Protein ID | pfu_aug2.0_56.1_20137.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_56.1_20137.t1 MPLRPQPITFITSPLMRLGNKCEPHQRRGAQYGDIANLPTKPRNLTAAIVSKRFVTLKWESPLSSGATSITAYSVFWRER GSERERVLNTTESHLEANIQHLKPNTNYEFRVQAYNTYGPSPKFASLTVLTDKDVDVPSPAVNVRATPLSPHSILVQWDP PQMPKGIITKYILIYYESLIVRWEPPPPDSQNGVITGYKIRYKKRSGEVRGSKSVTTDGNRRLYALTDLDKNSEYQVKIS ALTVNGSGPASERLRATTYKDDLDESAVPPPPQRIRVTPYAHSIRVSWSSPNPESKVLVRGYTLGWGKGVADDYQKVLDA DTHVYTIEHLHPSSEYVITVRAFNNRGDGQPRYQTATTSEETFQETITPMMPPVGLKTIVLSPSTVVLTWSDTSLGTNQV VQDNRFYTVRYRAVSDSGRYRLLNSTDLNAHIDNLRPNTRYEFEVKVIKGRRTSEWSMKEVNKTKEAAPGSAPRDLTPIP KENDPTAVTVNWQPPAKPNGQITGYLVYYTTDATHDVRDWVYEGVLGDELSATIRHLTLDTTYYFKVQARNSKGYGPSSQ TIMYKTPTIDGNGGGKVDAPKDPGIANPGNRIWNYSPTNPGSDDKSETDKKSDGGVGGLSTGIINIIIASVVGTTFCVVI VVVAIIYCKRRDNNDRNKRTNQNLTQSPNKGKPQGSAKPDVLWINDIEMKNVDKPDRSESMLTMSNASTLQRRSSNEYRS MDDLPPYHPDIERNFGPDMYYHPPSESEERERFLPPPRQQGSGLIRPKPTKPMMIPVDTQPPPRELKPQQSPYKKATPSV SIKPRAIPIISTPKAPDVVLKAGKEIDPDIQKSVSTEELTAEMANLDCLMKDLNAITQQNFEC |
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