Gene
| Gene Model ID | pfu_aug2.0_560.1_00887 |
|---|---|
| Locus | scaffold560.1 : 117326 ... 145450 : + |
| To GenomeBrowser | scaffold560.1:117326..145450 |
| Genes list of scaffold | scaffold560.1 |
| Synonym | pfu_aug1.0_1460.1_44042 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_560.1_00887.t1 | 2 | 1 | RhoGEF | 774 | 852 | 8.6e-34 | 116.9 | 2.4e-12 | 1.8e-08 | 34.4 |
| pfu_aug2.0_560.1_00887.t1 | 2 | 2 | RhoGEF | 909 | 1016 | 8.6e-34 | 116.9 | 2.8e-26 | 2.1e-22 | 79.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_560.1_00887.t1 | gi|676427321|ref|XP_009044909.1| | hypothetical protein LOTGIDRAFT_170816 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_560.1_00887.t1 | gi|642912009|ref|XP_008199058.1| | PREDICTED: rho guanine nucleotide exchange factor 17 isoform X1 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_560.1_00887.t1 | gi|642912011|ref|XP_008199059.1| | PREDICTED: rho guanine nucleotide exchange factor 17 isoform X2 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_560.1_00887.t1 | gi|242020316|ref|XP_002430601.1| | conserved hypothetical protein [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_560.1_00887.t1 | gi|749784361|ref|XP_011146050.1| | PREDICTED: rho guanine nucleotide exchange factor 17 [Harpegnathos saltator] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_560.1_00887.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_560.1_00887.t1 atggaaacgggaaatgtacaagaggccgacagtgcaggggaagatagcgcgattgtgagcaataatgcgaaggaatttga tgaaacaaacgcactttcagagctggatgttgaaggggagaggcaggaagaggagttgaaggaggaagggacgacaggag gagaagaaaaagaaagtagtcgagaggcgtcggaaactcctacactgatagatacggaaacggaaaacgaagtcgattcg accggagtaaagttcgaaaatcagaatgaggaagatgatcgaggaagggacgaagacgtgaagggcagtgaggaagttgt taagtcgaaggaagaggactctgatgtgaaggaggaggaatttaagttgaaagaggatatagaaaacgaggcaagatcca ccgttgtttctccaaaaatattgcgtccgaaacttccagatttcaaagagaatggtcagattaaaacgggtggtcattca agatcaaaaactgatcccggaaagggaagtgatattaaagcaattattgataaaactgtggaagatatcaaagtattaaa tcaggtagacttcacaaagacttacagtcgtcctaagaagtttccgaaaccattcgctcaaaaatctcagtccacgcatg cgtcgccgagggcgtcaccaacttcctgttccccgtgtattattgacgattccgcgtcttcactcaatagaaatcgcagt cgcagtctgaaaatactgacagatatattgaaaagtggaagagggggagcgggaaacattccaaaagatgcagcggagga agggaaatctgtgagcgatagtcacttagtgcctcgtaagccgtcgcttgttaaggaagaagactgcgagagacgatcta gttcggacggtcagatcggtaaaagttcagaatctagcaagaaaaaggtttctacaggatcaatagctcgtgatagtgga acagccgattccgataaaactaactatagcacaccggaagtgccctctcctagcgaggagacgagagacatcaaatcgcc cgtccggaagaaagatttttcaaaatttcggcgcgcaaagagcgaggttcgcaaattagccgtatcagacgatgagggag taggggaatccgaccaagaggctccacatactgccggtccaaagtcatatcatacgatagacacgaactctaaatttttc actctctggaaaactggtgctccgaaacgacgaagtggtttcgccggtctagtgcaatctgtgtacaacaaggacgatat gtctcgcggtgatcaaccttatataggtcctcggaagttacatcgggtcgaattaaaacccattccatctagtcgtaaaa tatcctctataaggcacgtgacccacccacccacctctaaaatcacattccgagaggacggtgcattagattcaaacggt tttgggactatcctaaaatctcccaccaccgacagacccccgccattgcctggtgagcttgatagtcaggcaagcgagtt gtctcttgccgatagtcagctaggcgaaagtgtgacggacgacaccgcatcgtttcaggatgcgttggaaagtatggtta acgatccgtatgaatacgacaacgatagaccgatagagaagaaaaatggcaaactcaagccaaaatcccgaagtgatccg agtggagaaaagtcgaaggaaaatatggacttcccgaaggttgtaacatcggcacacagttcgccgatattatcaaaaag tagcgagggggaagaattggaggaggacgaaggttcggaagataccgtcaaaagcgaagagatcagtagtatgaccgaac atgcgaaagaaaaacgcgaactgcgagcttccctttcgttagacgaaaatgtactagaaaaaggatcgtcggaaaatatt ctaagtcccgattcttctttcgatgcgggattaggtcaagaggaagttaaaagtggtgttaaatttctatctttttacac tgacgacatttcaggaccctcatcgccgcggaatgaatcgccaacgggaacaccggaaaggcagccgaatcacctcgagg taccgcacccaacttccggaagtactagtaagaaaggaatcggaaggagcgcaagttcggcaagtgtcctcgtgcgagaa cggaagaattcggcggaaaagaaagagaaccggaagcacagtttaaccccagcggaagaaggaagtgataaaatacattc acttcctctttcagattcccgagttgagtccaccagccttccagctcttaataaacctttaaaggacaaacgattccata tagtagaggagttgtacagaaatgagcaggagtatgtggacgccctaactgtccttaaagataaatacatgttaccgttg aagacgtcatgtagcagcgttgacgagaatctcgtcgacaacatcttctatatgattccagaaatcctcatgcaccacac tgtgtaccagaacagtctggataaagtgtggaaaaactgggacatcaagagtaccataggcaatgtcatagtagctacag taagtaccataggcaacgtcatagtagctacagttagtaccataggcaacgtcatagtagctacagtaagtaccataggc aatgtcatagtagctacagtaagtaccataggcaacgtcatagtagctacagtaagtaccataggcaatgtcatagtagc tacagtaagtaccataggcaatgtcatagtagctacgttttccaaacagactgttatagactgttacatttcctttgtgg agaactacaaaacttcagggaaggtgatagaaaatgctctacagaccaaatcctcagtacagaaatttattgagcaatgc catagagacagtggaagtaaactcacaatgaaagatttgatagtcagaccaatacaaaggattcccagatatgaactatt aatccagaggcttatagaacacacccccagggatcatccagactttctcctgttaaaggaggcggagaaagtcatgcacg acttcgcgataaaactcgggacggtgaacgagactcagcacgaggaagatcagcaagaaagcttaaagaggctggaactc ttacttattactgatctggctgtgccagaaagacagtacctcagacacgatatggtgaatatcataaccaagaaggacca gtgctgtgtttggatgttctctgatctcatcatagtaagcagtgtaaaacgccgaagtggaccggttactcgtaaagtct ccattatattgaaatctccaacgggtcaggattttgctgagaacattaaacacaaagtctggcttcgtgttggattacac gctgtagaaattgtcaaaaatcagactctggtgagccaacagaagtctgtggacccagaacagttagaggacgacatcaa cctgctgaatgatattaacgatctgacctccaaattatcatgtccccattctagtctagatgaagttgtacaagaaatgt tgaattccttaggcaaacagtattctgaagttgccctgaggaattctacagccgattctaataaactggaccttctagtc actactcaggaaagaatctatcctttggaggtatcgtttaattcagcagagaagcgatcacaatgggaaagcaccttcta tgatgctaaacaaaaattagctatgatgtcagataagagagcaccagaattcttacaagccttacccattaccaaaacaa gagcagggatgcagttctcctgtgcagcaccaatagatggcctgaatgccaaaggtcatcgagacgtgtgggtgtgtaac agtgatggatatgtaggtcacatgtgcttactgagtctacagcctgaaccaatcgtaacactcaatacacctgtcccagg atgcaatgctaggatcctgtgtatatgtgctgtaccagcatatagcggaacatttaggaggtttgaaaatattgatactg actcagagtcaagtggtgaggagtcagagtcaatggaggatgtgactgctgaggacagggaggtcaatgctaatgttgaa gatcctggcatagagattaagccgctcaacgtgtcagaaattacccagagtacaccagactctatcacatgctccggtaa ctggaatcaggacccgcataaaagtaccatgtggctcggtacagaggatggatgcatccatatattccagtctacagata atattaaaacgacaaagaataaactgaaaattcaccatgaatctcccgtatattgtatagtgtatcttgacaataaggtg tttgtatccttagccaatggagatcttatagtctacaagagagatgcagaaggagtatgggactcggagaatccctacac acgttctataggcacggctcagtcacctataacacggatgttagccgtagccggaaaattatggtgtggctgtcagaatg tgataaaagtcattaaccccctcactctcagtacagagacatcctttaccatttcgtctaactctaatcgtggagtacag agcttagtgtgttctggacagggcgtgtggctggcgagtcaacagagctctaaaatcctactctatcacgctacgtcgta cgagttcttaatggaagtcagtatcgcccaggcagtctcacaaaaactacagtcggcagatgacataatccgtcaacaca aggcagcatgtttgcgtatcacgtccctgttaatatgtaaggacttactgtggataggtaccagtgccggggtcatactc actgtaccaacgcctcgtatcacatcaacgacaaaccgcggctcaatatcatcaccatcagttacagggttagtgtatgg acacacaggacatgtgagatttttaacttgtgttgaaatgaatgcaccgttatcttcaaacaaatcagatagtgaaagtg acgataaaccttcagaagccgtacccccacacgatatgcatcgtcggtcatccatggcagcaacgaccgcaactctagcc actcgtatgttggttataagtggtggagacgggtatgaagatttccgtagtaacgcgtcgaacgaatctgcgggacggga cgatagtactaaccaccttcttctgtggcaagtttga |
|
Protein
| Protein ID | pfu_aug2.0_560.1_00887.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_560.1_00887.t1 METGNVQEADSAGEDSAIVSNNAKEFDETNALSELDVEGERQEEELKEEGTTGGEEKESSREASETPTLIDTETENEVDS TGVKFENQNEEDDRGRDEDVKGSEEVVKSKEEDSDVKEEEFKLKEDIENEARSTVVSPKILRPKLPDFKENGQIKTGGHS RSKTDPGKGSDIKAIIDKTVEDIKVLNQVDFTKTYSRPKKFPKPFAQKSQSTHASPRASPTSCSPCIIDDSASSLNRNRS RSLKILTDILKSGRGGAGNIPKDAAEEGKSVSDSHLVPRKPSLVKEEDCERRSSSDGQIGKSSESSKKKVSTGSIARDSG TADSDKTNYSTPEVPSPSEETRDIKSPVRKKDFSKFRRAKSEVRKLAVSDDEGVGESDQEAPHTAGPKSYHTIDTNSKFF TLWKTGAPKRRSGFAGLVQSVYNKDDMSRGDQPYIGPRKLHRVELKPIPSSRKISSIRHVTHPPTSKITFREDGALDSNG FGTILKSPTTDRPPPLPGELDSQASELSLADSQLGESVTDDTASFQDALESMVNDPYEYDNDRPIEKKNGKLKPKSRSDP SGEKSKENMDFPKVVTSAHSSPILSKSSEGEELEEDEGSEDTVKSEEISSMTEHAKEKRELRASLSLDENVLEKGSSENI LSPDSSFDAGLGQEEVKSGVKFLSFYTDDISGPSSPRNESPTGTPERQPNHLEVPHPTSGSTSKKGIGRSASSASVLVRE RKNSAEKKENRKHSLTPAEEGSDKIHSLPLSDSRVESTSLPALNKPLKDKRFHIVEELYRNEQEYVDALTVLKDKYMLPL KTSCSSVDENLVDNIFYMIPEILMHHTVYQNSLDKVWKNWDIKSTIGNVIVATVSTIGNVIVATVSTIGNVIVATVSTIG NVIVATVSTIGNVIVATVSTIGNVIVATVSTIGNVIVATFSKQTVIDCYISFVENYKTSGKVIENALQTKSSVQKFIEQC HRDSGSKLTMKDLIVRPIQRIPRYELLIQRLIEHTPRDHPDFLLLKEAEKVMHDFAIKLGTVNETQHEEDQQESLKRLEL LLITDLAVPERQYLRHDMVNIITKKDQCCVWMFSDLIIVSSVKRRSGPVTRKVSIILKSPTGQDFAENIKHKVWLRVGLH AVEIVKNQTLVSQQKSVDPEQLEDDINLLNDINDLTSKLSCPHSSLDEVVQEMLNSLGKQYSEVALRNSTADSNKLDLLV TTQERIYPLEVSFNSAEKRSQWESTFYDAKQKLAMMSDKRAPEFLQALPITKTRAGMQFSCAAPIDGLNAKGHRDVWVCN SDGYVGHMCLLSLQPEPIVTLNTPVPGCNARILCICAVPAYSGTFRRFENIDTDSESSGEESESMEDVTAEDREVNANVE DPGIEIKPLNVSEITQSTPDSITCSGNWNQDPHKSTMWLGTEDGCIHIFQSTDNIKTTKNKLKIHHESPVYCIVYLDNKV FVSLANGDLIVYKRDAEGVWDSENPYTRSIGTAQSPITRMLAVAGKLWCGCQNVIKVINPLTLSTETSFTISSNSNRGVQ SLVCSGQGVWLASQQSSKILLYHATSYEFLMEVSIAQAVSQKLQSADDIIRQHKAACLRITSLLICKDLLWIGTSAGVIL TVPTPRITSTTNRGSISSPSVTGLVYGHTGHVRFLTCVEMNAPLSSNKSDSESDDKPSEAVPPHDMHRRSSMAATTATLA TRMLVISGGDGYEDFRSNASNESAGRDDSTNHLLLWQV |
|