Gene
| Gene Model ID | pfu_aug2.0_563.1_10928 |
|---|---|
| Locus | scaffold563.1 : 39635 ... 64235 : - |
| To GenomeBrowser | scaffold563.1:39635..64235 |
| Genes list of scaffold | scaffold563.1 |
| Synonym | pfu_aug1.0_38006.1_41060 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| collagen-like protein 7 | GO:0005618 GO:0019012 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_563.1_10928.t1 | 3 | 1 | Collagen | 237 | 286 | 1.9e-25 | 88.1 | 7.7e-12 | 1.4e-08 | 34.1 |
| pfu_aug2.0_563.1_10928.t1 | 3 | 2 | Collagen | 277 | 332 | 1.9e-25 | 88.1 | 3.9e-12 | 7.3e-09 | 35.0 |
| pfu_aug2.0_563.1_10928.t1 | 3 | 3 | Collagen | 319 | 377 | 1.9e-25 | 88.1 | 3.3e-13 | 6.2e-10 | 38.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_563.1_10928.t1 | gi|311978070|ref|YP_003987190.1| | collagen-like protein 6 [Acanthamoeba polyphaga mimivirus] | 9.0e-36 |
| pfu_aug2.0_563.1_10928.t1 | gi|501958759|ref|WP_012677468.1| | cell surface protein [Streptococcus equi] | 2.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_563.1_10928.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_563.1_10928.t1 atggaacttggtaggaatgaagtaatcatggtcccctacaaatgttgttgtttttgtccggatacgtcaataggtggcgc cacaacagccaaaagaaattcttttgtcggcaactccttggaccaaagatctctacgttatttccaagaagatttgagag cactgcaagttgtctggattcagcatgaaatcccattcaataatttctcctctataacatcagtgacgtacgttacccat cccgggcccacaacgtcctacacggggcatatccttttatttgagaaaatggcatcaggatacaaacttatctttaaaga gagtattaattatgattccactgctgggacacacactgtggttctgaccaatccccctgtggtaggatacaatcatgtct tgggttttgcctactctcagtccatcggacctatcagtatgggcttcacagctttcgaaaatgaaggaacattgtacaaa aggtttgatacgtcatcagacagcaacttggtcatcggggatgtttacgcgacagattcctttacgattaaaaactacgt gttctccataggtgccaacatcctatcaagtgactctgaaacaacggaagtggtcacgacgacgacaacaacaacaacaa caataacaacaacaacgctacccactaccactacaacagtcgtcacggaggcaccggctaccgaaaatacaggagaaaaa ggaaatataggtgataaggggatagaaggtgaaaaaggcgacaaaggagataaagggttcaaaggagaaaaaggcatgaa aggagtaaagggagaaaaaggtgtaaagggagagattggcgaaaaaggagataaaggtgaaagaggagaaaagggagaca aaggagaaactggttttaaaggttcaaaaggggaaaagggcgtaaaaggacaatatggcgataaaggcgataaaggcatg aaaggtgacaaaggagagaaaggcaataaaggagaaaagggcgacaagggcgaaaaaggaaacaaaggcgacaagggtta taaaggagagaagggtgataaaggcaacaagggtgataaaggagaggaaggagaaaagggagtaaaaggaaataaaggtg ataaaggtaacgtattggcaataaagagcgaaaatgcatcgtccagaaagtatggcaccaggaacatcgatactgcaaag cggctgtccaaagttgaaggcgtgcttgatgaagtccgacaacaagatggaaataaaactgtgcttacagtcgtgctggc ggccatcattgttgttatcgtgttgtcggcatttattgtactggtggtcaggatgaagaaaatgtccagaaagatagaca gacagtatggcggagatagacaggactttatgtccactagtggaagttctaccagccattgcaatagtgacagattagat acagcttcttggtataactcagatgttagaaactcctga |
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Protein
| Protein ID | pfu_aug2.0_563.1_10928.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_563.1_10928.t1 MELGRNEVIMVPYKCCCFCPDTSIGGATTAKRNSFVGNSLDQRSLRYFQEDLRALQVVWIQHEIPFNNFSSITSVTYVTH PGPTTSYTGHILLFEKMASGYKLIFKESINYDSTAGTHTVVLTNPPVVGYNHVLGFAYSQSIGPISMGFTAFENEGTLYK RFDTSSDSNLVIGDVYATDSFTIKNYVFSIGANILSSDSETTEVVTTTTTTTTTITTTTLPTTTTTVVTEAPATENTGEK GNIGDKGIEGEKGDKGDKGFKGEKGMKGVKGEKGVKGEIGEKGDKGERGEKGDKGETGFKGSKGEKGVKGQYGDKGDKGM KGDKGEKGNKGEKGDKGEKGNKGDKGYKGEKGDKGNKGDKGEEGEKGVKGNKGDKGNVLAIKSENASSRKYGTRNIDTAK RLSKVEGVLDEVRQQDGNKTVLTVVLAAIIVVIVLSAFIVLVVRMKKMSRKIDRQYGGDRQDFMSTSGSSTSHCNSDRLD TASWYNSDVRNS |
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