Gene
| Gene Model ID | pfu_aug2.0_563.1_10937 |
|---|---|
| Locus | scaffold563.1 : 238763 ... 244497 : + |
| To GenomeBrowser | scaffold563.1:238763..244497 |
| Genes list of scaffold | scaffold563.1 |
| Synonym | pfu_aug1.0_1907.1_22791 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| high-affinity choline transporter 1-like | GO:0003333 GO:0005298 GO:0008292 GO:0015220 GO:0016021 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_563.1_10937.t1 | 1 | 1 | SSF | 39 | 437 | 1.5e-38 | 132.5 | 1.3999e-42 | 2.0e-38 | 132.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_563.1_10937.t1 | gi|260816850|ref|XP_002603300.1| | hypothetical protein BRAFLDRAFT_119704 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_563.1_10937.t1 | gi|524874942|ref|XP_005094203.1| | PREDICTED: high-affinity choline transporter 1-like isoform X1 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_563.1_10937.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_563.1_10937.t1 atggctatcaacgttcccggactcgtctctatcatcgtcttctacatcatcatcctcgtcattggattattggcagcaag aaaggctcgaggaaaacaaaatagtgagaatctgatgctggcaggacgggatatagggttactggtaggagtctttacaa tgacagctacttgggtcggcgggggtttcataaacgggacagcagaatatattttcaaagacggactggtttggtgccaa gctcctcttggttatgcccttagcctggcgttaggaggtattttcttcgcaaaccgaatgcgttctcagggatacgtgac tatgatagatccgttagctatacgatatggaccccgtatgggtggtttactgtacatcccatgtctgcttggtgatatat tctggacaggggctattctagcagctctaggtgccactcttacagtgataatagaccttgaccaaaatatcgccattatt gtgtcggcagccattgctatgatgtacacattgtttggtggcctatactctgtcgcatacactgacgtcattcaacttat ttgcatattcattggactgtggttatcaatcccttttgcattcatgaatgagaatgttggagacatcacaaatatgacgg catcaatcttgccgaatacaactacagactggataaaggagctggatcctaagtacgtgggtctgtacatggactcagga ctcctcctgatgtttggaggtataccgtggcaggtgtatttccagagggttctatcagctcggagctcattcaatgccca ggtcttgtcgtttgctgcagcttttggatgcgtggcgatggcagtgccctctgttcttattggtgccatagcaacaaaca caaactggaatggtacagattacggcaaggcggagattccagatgctgagaaacagaacgttcttcccttagtattgcag tacctgactcctgtatgggtgtccttcataggtctaggtgctgtgtcggctgctgtcatgtcgtctgcagactcgtccat cctgtcatctagcgccatgtttgctaggaacgtctacaaaatgattttcagacaaaaggcttctgaacgagagatagtgt gggtaatgcgtttggccgtgttgggagtagcggccttggctacaatcatggccatcaccgtgaagtcaatatacacactg tggttcctgtgttcagaccttgtctatgtgactgtgttcccccagctcctgtgtgtcatctacctacccttcaccaacac atatggatctctgatcagcttcattctggggatatttctacgtttaagtggtggggagtccgtgctgaacatacctccgc tgatagagtatccgtactacacagaggctgatggccagctgttcccatacaaaacactatgtatgctcgtgtcttttacc tgcataatactcatttcattactgaccaatttgctatttgagaaagaaattcttcccagatatctcgacgttttcaagtg tgtaccagagaaaggaatagaagtgaagttgacggccctaaaactttacaaaccagatgatggtcaaacaaatccgggtt ttacagacatcagagatgtaacatcatgttga |
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Protein
| Protein ID | pfu_aug2.0_563.1_10937.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_563.1_10937.t1 MAINVPGLVSIIVFYIIILVIGLLAARKARGKQNSENLMLAGRDIGLLVGVFTMTATWVGGGFINGTAEYIFKDGLVWCQ APLGYALSLALGGIFFANRMRSQGYVTMIDPLAIRYGPRMGGLLYIPCLLGDIFWTGAILAALGATLTVIIDLDQNIAII VSAAIAMMYTLFGGLYSVAYTDVIQLICIFIGLWLSIPFAFMNENVGDITNMTASILPNTTTDWIKELDPKYVGLYMDSG LLLMFGGIPWQVYFQRVLSARSSFNAQVLSFAAAFGCVAMAVPSVLIGAIATNTNWNGTDYGKAEIPDAEKQNVLPLVLQ YLTPVWVSFIGLGAVSAAVMSSADSSILSSSAMFARNVYKMIFRQKASEREIVWVMRLAVLGVAALATIMAITVKSIYTL WFLCSDLVYVTVFPQLLCVIYLPFTNTYGSLISFILGIFLRLSGGESVLNIPPLIEYPYYTEADGQLFPYKTLCMLVSFT CIILISLLTNLLFEKEILPRYLDVFKCVPEKGIEVKLTALKLYKPDDGQTNPGFTDIRDVTSC |
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