Gene
| Gene Model ID | pfu_aug2.0_563.1_10940 |
|---|---|
| Locus | scaffold563.1 : 277331 ... 284380 : - |
| To GenomeBrowser | scaffold563.1:277331..284380 |
| Genes list of scaffold | scaffold563.1 |
| Synonym | pfu_aug1.0_4532.1_67001 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_563.1_10940.t1 | 2 | 1 | Synaptobrevin | 4 | 26 | 5.5e-18 | 64.3 | 0.014 | 23.0 | 4.6 |
| pfu_aug2.0_563.1_10940.t1 | 2 | 2 | Synaptobrevin | 149 | 235 | 5.5e-18 | 64.3 | 6.5e-21 | 1.1e-17 | 63.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_563.1_10940.t1 | gi|602675732|ref|XP_007443342.1| | PREDICTED: vesicle-associated membrane protein 1-like, partial [Python bivittatus] | 4.0e-07 |
| pfu_aug2.0_563.1_10940.t1 | gi|524952320|ref|XP_005076158.1| | PREDICTED: vesicle-associated membrane protein 8 [Mesocricetus auratus] | 8.0e-07 |
| pfu_aug2.0_563.1_10940.t1 | gi|25148580|ref|NP_500232.2| | 4.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_563.1_10940.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_563.1_10940.t1 ggaactaaaactgaaaacttggagaagctcctccaaactacggagaagattaatgaaaagatgacagacaaatcagaaga ggacactaaggaattatcccagaaaccggcatcacatacatggcctgaaagaaagaaacaaacggattctatagacgtcg tcgacgagggaccatctccgggaaagtcgaagggacgacctaaagtattgaaaagtttatcttggaagttgaagggcaag aagaaggctcctgaagtgcactcagacatcgaagagccagttgctgtacataaagttacttcaagtcctacaaatacgtc ggcaggtcaaagaaaaagtacggatgtaaagcatggcaatgaggatttgtcaaagatatcaccacaacaggaaaaaccag taaaatctagtgccaccgaatatccagagtcacgctctacgacggccgatgacgtcagacaagtgaaggctcaggtggga ggagttaaagaggtagtttatgacaacatcaaattactagaggaaagagatcacaatttggcaagtttggagaatctggc agaaaatgtccaagaaacgtccactatgttcaaaatggtagctaggagaactcataataaaatgcgttggcggttatgga agtggcgcctgatcctgattggtggaattgtatttgctgttgttattattgttataattatagtagttgccacactgcca tctgacgatgggaatgaagggaacgataaccaaacgggacaacctattgtaacagtggtgccaagtaccacggcatcatc gcgctaa |
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Protein
| Protein ID | pfu_aug2.0_563.1_10940.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_563.1_10940.t1 GTKTENLEKLLQTTEKINEKMTDKSEEDTKELSQKPASHTWPERKKQTDSIDVVDEGPSPGKSKGRPKVLKSLSWKLKGK KKAPEVHSDIEEPVAVHKVTSSPTNTSAGQRKSTDVKHGNEDLSKISPQQEKPVKSSATEYPESRSTTADDVRQVKAQVG GVKEVVYDNIKLLEERDHNLASLENLAENVQETSTMFKMVARRTHNKMRWRLWKWRLILIGGIVFAVVIIVIIIVVATLP SDDGNEGNDNQTGQPIVTVVPSTTASSR |
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