Gene
| Gene Model ID | pfu_aug2.0_565.1_17580 |
|---|---|
| Locus | scaffold565.1 : 136327 ... 149805 : - |
| To GenomeBrowser | scaffold565.1:136327..149805 |
| Genes list of scaffold | scaffold565.1 |
| Synonym | pfu_aug1.0_9376.1_31762 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| eukaryotic translation initiation factor 3 subunit partial | GO:0001731 GO:0003743 GO:0006446 GO:0016282 GO:0033290 GO:0070062 GO:0071541 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_565.1_17580.t1 | 5 | 1 | WD40 | 18 | 31 | 3.0e-14 | 52.2 | 0.2 | 1500.0 | -0.7 |
| pfu_aug2.0_565.1_17580.t1 | 5 | 2 | WD40 | 65 | 90 | 3.0e-14 | 52.2 | 0.024 | 180.0 | 2.2 |
| pfu_aug2.0_565.1_17580.t1 | 5 | 3 | WD40 | 101 | 136 | 3.0e-14 | 52.2 | 4.3e-08 | 0.00032 | 20.4 |
| pfu_aug2.0_565.1_17580.t1 | 5 | 4 | WD40 | 149 | 165 | 3.0e-14 | 52.2 | 0.13 | 970.0 | -0.1 |
| pfu_aug2.0_565.1_17580.t1 | 5 | 5 | WD40 | 201 | 231 | 3.0e-14 | 52.2 | 9.8e-09 | 7.2e-05 | 22.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_565.1_17580.t1 | gi|696983634|ref|XP_009560176.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit I, partial [Cuculus canorus] | 0.0 |
| pfu_aug2.0_565.1_17580.t1 | gi|543278023|ref|XP_005427180.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit I [Geospiza fortis] | 0.0 |
| pfu_aug2.0_565.1_17580.t1 | gi|690463421|ref|XP_009330494.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit I, partial [Pygoscelis adeliae] | 0.0 |
| pfu_aug2.0_565.1_17580.t1 | gi|701303441|ref|XP_010012332.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit I, partial [Nestor notabilis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_565.1_17580.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_565.1_17580.t1 atgcaaactttcagggtaggtaagcagttgacattactagagacagcgactgcagtaaggacatgtggcttctccttcag cgggcggtatctgatgtacaccacagataaaactatgggaaggccatgtgaagttcatatatttgatgtcaataacctta gatcaggtgaaccagaaatcgttattcctatatcttcatccaaaatcacagcagcagtgtggggtccttatgaagaatat atcatagctggacatgaaaatggagaaatagcacattatgatgtcaagactggcaagaaattattaacagcaaaagatca ctcaaaacagataaatgatattcagctgtcaaaagacatgacaatgttaatttcagcatcaaaagacactacatcaaagt tgtttgacaccaatactctacgtcatatgaagacgtacaagacagaacgtcctgtcaactctgcgtccctgtctccaatc atggatcatgtggtgttaggaggaggtcaggaggccatggatgtcaccaccacctcaacaaggataggaaaatttgatgc cagattttttaaccttgtctttgaggaagagtttggtagagttaaaggtcattttggtcccataaacagcacagcatttc atccggatggtaaaagttacagcagcggaggagaggatggttacgtcagagttcactattttgatccaagttattttgaa ttccgatttgaattctag |
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Protein
| Protein ID | pfu_aug2.0_565.1_17580.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_565.1_17580.t1 MQTFRVGKQLTLLETATAVRTCGFSFSGRYLMYTTDKTMGRPCEVHIFDVNNLRSGEPEIVIPISSSKITAAVWGPYEEY IIAGHENGEIAHYDVKTGKKLLTAKDHSKQINDIQLSKDMTMLISASKDTTSKLFDTNTLRHMKTYKTERPVNSASLSPI MDHVVLGGGQEAMDVTTTSTRIGKFDARFFNLVFEEEFGRVKGHFGPINSTAFHPDGKSYSSGGEDGYVRVHYFDPSYFE FRFEF |
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