Gene
| Gene Model ID | pfu_aug2.0_569.1_30925 |
|---|---|
| Locus | scaffold569.1 : 96462 ... 132395 : - |
| To GenomeBrowser | scaffold569.1:96462..132395 |
| Genes list of scaffold | scaffold569.1 |
| Synonym | pfu_aug1.0_9073.1_31711 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_569.1_30925.t1 | 3 | 1 | C1q | 200 | 251 | 2.0e-35 | 121.5 | 3.1e-12 | 5.7e-09 | 36.0 |
| pfu_aug2.0_569.1_30925.t1 | 3 | 2 | C1q | 263 | 298 | 2.0e-35 | 121.5 | 0.83 | 1500.0 | -1.0 |
| pfu_aug2.0_569.1_30925.t1 | 3 | 3 | C1q | 403 | 530 | 2.0e-35 | 121.5 | 1.2e-28 | 2.2e-25 | 89.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_569.1_30925.t1 | gi|690457659|ref|XP_009327970.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 [Pygoscelis adeliae] | 2.0e-12 |
| pfu_aug2.0_569.1_30925.t1 | gi|686599149|ref|XP_009275758.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 [Aptenodytes forsteri] | 6.0e-12 |
| pfu_aug2.0_569.1_30925.t1 | gi|697013481|ref|XP_009579107.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 [Fulmarus glacialis] | 6.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_569.1_30925.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_569.1_30925.t1 atgacgaatttacgtactgacgaaatagtcattttgaacgaattgacgaaaattggtactgacgaaaataaagcaattta cagacagattgttggtatcctagccattgatccgaacggtttatgttcccagatattggacatcgactgtaataactaca ctcctgttgagacaaatgagattgtctgtggcacaaatcatgtagagtatccaaacttcgtggagcaattatactcgttc cccgtgactggatgacagatagttggtatcctagccattgatcctaacggtttatgttcccagatattggacatcgactg taataactacactcctgttgagccaaatgaggttgtctgcggcacaaataatgtagagtatccaaacttacgtagaatac tactctttcttatcatccaatcttttctttttggacacctttttgccagtttaccgatgacaaataatacatcagaacta caagcactgaagcaggagatagccaacctgaagttgcaaataggaaaattgacgtcaaccgttactcagatgaaagcaca ttcagccgctcatgctaacacaacgaggacgtattcgttctatgcctattccactcaaacacaatacctgggagctcaac aacctataatgttcgactacgcagaaacaaacatcggaaactgttttaacatacaaacaggaagattcagagcaccggta cgaggactgtacttcttttccggaaacatcatggcggaaccaggacaatctccctttccacctatagcttttttcgcagt cacatctcaggaggaggtactgggagactaccagatagtcatatttgaaaacgtaacaaccaaaaagtgggngggagact accagacagtcacatctaaggaggaggtactgggagactaccagacagtcacatctaaggatgagaagttgtatgtttat accacagttgtgtgtctatggagacctccgggtttgaaagaatcctttggaatggatatatcacatatcatagtggtaac gatactgacatcagggctcactcatggggaggcacaagaagaacatttcaactgcaaagctgagatcgagaagctcaccg gaattataacccaaatgaacaacactttacacaagacaggtcattctgcggaaagaagtgtgactcaaaatcctgaagga gctgtggcattttacgctcatgcaacaaaatctcttgttctcggagatcaacagaccatcgttttcgacaacgtcgttac gaacttggcttccggctatgatacacaggatggccaatttaccgcaccggaacctgggctctactttttttcaacgagtc tgatggcatatccaggccattatatacacgcacaaatggtacataatggcaatgcaatatcacacgtctttgctgcaaag ggtgcgtatagttttgaggatgatacaggcacatctgtggtaaaccttgttctccagaagggtgacaaagtctgggtgag gcatacaaacgatcctagtggtatagcccgacttgaagagtattactcaactttttcaggatttttgattctgccgatgt aa |
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Protein
| Protein ID | pfu_aug2.0_569.1_30925.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_569.1_30925.t1 MTNLRTDEIVILNELTKIGTDENKAIYRQIVGILAIDPNGLCSQILDIDCNNYTPVETNEIVCGTNHVEYPNFVEQLYSF PVTGXQIVGILAIDPNGLCSQILDIDCNNYTPVEPNEVVCGTNNVEYPNLRRILLFLIIQSFLFGHLFASLPMTNNTSEL QALKQEIANLKLQIGKLTSTVTQMKAHSAAHANTTRTYSFYAYSTQTQYLGAQQPIMFDYAETNIGNCFNIQTGRFRAPV RGLYFFSGNIMAEPGQSPFPPIAFFAVTSQEEVLGDYQIVIFENVTTKKWXGDYQTVTSKEEVLGDYQTVTSKDEKLYVY TTVVCLWRPPGLKESFGMDISHIIVVTILTSGLTHGEAQEEHFNCKAEIEKLTGIITQMNNTLHKTGHSAERSVTQNPEG AVAFYAHATKSLVLGDQQTIVFDNVVTNLASGYDTQDGQFTAPEPGLYFFSTSLMAYPGHYIHAQMVHNGNAISHVFAAK GAYSFEDDTGTSVVNLVLQKGDKVWVRHTNDPSGIARLEEYYSTFSGFLILPM |
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