Gene
| Gene Model ID | pfu_aug2.0_571.1_04347 |
|---|---|
| Locus | scaffold571.1 : 105896 ... 136229 : + |
| To GenomeBrowser | scaffold571.1:105896..136229 |
| Genes list of scaffold | scaffold571.1 |
| Synonym | pfu_aug1.0_6452.1_60020 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| integrin alpha-9 | GO:0007155 GO:0016020 GO:0044464 GO:0044763 GO:0051179 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_571.1_04347.t1 | 1 | 1 | Integrin_alpha2 | 447 | 940 | 2.7e-31 | 108.9 | 1.5e-32 | 2.8e-29 | 102.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_571.1_04347.t1 | gi|589948304|ref|XP_006986815.1| | PREDICTED: integrin alpha-9 [Peromyscus maniculatus bairdii] | 0.0 |
| pfu_aug2.0_571.1_04347.t1 | gi|524880424|ref|XP_005096876.1| | PREDICTED: integrin alpha-3-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_571.1_04347.t1 | gi|558166638|ref|XP_006124087.1| | PREDICTED: integrin alpha-9 [Pelodiscus sinensis] | 0.0 |
| pfu_aug2.0_571.1_04347.t1 | gi|557323017|ref|XP_006034579.1| | PREDICTED: integrin alpha-9 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_571.1_04347.t1 | gi|564265284|ref|XP_006271477.1| | PREDICTED: integrin alpha-9 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_571.1_04347.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_571.1_04347.t1 atgaacgtgtttagtatactgccgttgcttttaatagcttccgttaaaggatttaacatagagacaaaatttattgatgt tgttagtgtcagtaattcacagccgggcagttattttggatttgcattagattttgtaacacatggatcaaaaagctggc ttgttataggggcacccaagctaaatgatgtttcagccggcaacagaacaggtgcaaatcaaccaaatgtcaatcaaggt aaagatcatatgtggttcggaggatcaatggccgcagcggaaaactccgtaactgcttgtgcccctagatggataaacaa agtcaactcgagcgagtactacatgaatggactttgctatgttataccatcaggatattttgctgaaaccaggtttataa cacccagggtacgctcactactaaaccagttcccggacaaacagcacatcgcacctgattcggcccggaatgatatgaca tgggaatacggattaggaacagccggcttgtctgttatttacaatttgagtagtcagactcaagaacacaccatttatgg cgcaccaggagtaaatgaatttacaggtggagctatttcattccagacagacaatgaggtatatgttcatgggcagaatc taggagcagcttatgaatcaaaaatgtttggatacgccttggctatgggtatgttttacggaggtgttgaaagtaataaa gaagactactatctggccgtcggaggtccgagggccgagggtaccggagaagtgctcatcctaaaacatgactataccct tcataccaggcttcggataaatgagcctggtagttactttggttcatccctttgtgctgtgcagaggacttcggtgtcgt cagagaccttgttattggtaggagcacccacgtacagcaagcttacaaaatataacaagttctatacgagcacagtggag cagggagcagtgttcgtgtaccgactgaaagaaaatcaggctgatgctatccagatgctacagagctccactacagcaaa gtcgagatttggtatggcaatgagtgacttaggagacattaacggggatgactttcacgatgttgtgattggagctcctt ttgaagaggaccaaaaaggggtgatttatatttacaatggatacaaaaatggatttttggaaacacaaaggattgtggga aatgacatggacacgagtcttagaggatattttggatattcgtttgctcagaacaatattaactttaatggagataaatc caatgagtttgcagtgggtgcctttatgtcagacagcgcggtcatcctatttacccagcctgtgatagccatgcaggtta cagctaggcagtcgacaaatctaacgaccatcggtgaccctgatatgacaattcgtgcttgctttaaatatactggtgat agtacaattctaccaggagatgttaatgttgactataagataagagctgatgtagagttcagcggaaggactaagcgagt gtgtatggttaacggccaattctgtgactatgaagtgatggaacttaaccagcaaatcccgggatttaattttgatccta aatgtctcacccccttcacagtgagacttactgacacgcaagaaatccgagagctgtttatcccaatcgtattcagtatc cagttcaatatttctgacgccaatgcctgcactcgtaatatatgtcccgttattaaccgtttctatggaaaccttgacaa tccaaccaccagggaagtgaaggcagctacgcaagaaatccgagagctgtttatcccaatcgtattcagtatccagttca atatttctgacgccaatgcctgcactcgtaatatatgtcccgttattaaccgtttctatggaaaccttgacaatccaacc actagggaagtgaaggcagctacggttgatctgaagaagaatggatgtggtgcagacaacttatgtgaaacttatctaac gctacagtccgttgttgtgaagtatcatgactctgaaaacgtacttattctcggtcccaaatctaaaatgaccgtggacg tcaccgtgagagtgagcaatgaaccgtcatataatacgaaaattagattcttatgtgaccaagaactttcatacgtacgt tcaattgatgttggttcacaaatcggaatgaagtgctcagttattcggacaccgtttggacggatcgaaatcgaatgtga cacaaatccctctcagcttggagttgagagcggatctgagattaaagtaagcctggaatttgatgccagacttttgaagc caaatattaagtcgtttaaatttgaagttgaggttgtaaccaaaagtattaatgcaaatataggacaaaatagaagaaca ctatacatacctgtaaaggcaaaagtggatggagcatttgacaggttagcggccccagaagtgtacgttacaaagaagga cagagaagaatttgaaaccatgaagcacatcatcacatttttcaacagaggtccgagtaacatagacgataacacaacct ttaccgtaacatacccgtccggacgtataggagggaaatgggtcgtatccgtggtggagggagtgatgaacatatccaat gcccaaccagatctacaagtttcctgtaacaccaagacgacaatggttaccgatggcgatagctcatcctataaagattt cagggccatcagctttaacaccatgaattctacaagcgaggaagatatgaatgcacaatacgactgtacaaagcctgggg gaagttgtcacatggtgaagtgtacagtacgaccaatccccgcagatagctacgttttattccgacttgtttattcggtg gatccaaaattatatcaccgagcagggggtcaggatccgtctgtcaagtctgtagatctggtgtccaaggtggacgtcca attaccggcttccgtcacggcaactatgatacaaaatgacaatttcgctaaaaccgaagttttaccgtccaaacagaaag ccgagccgataccgagttggataatagtcctggccgtagtggctgccttactcgtgataggaattattgtactaattctt tggaagtgtggattcttcaaacgtaaggacaaggaaaagctgttagaaagacagaaggaagaagaagaagataaagacgg cacggctaatcctgcaatcaaggtcacgccagctgatgatcagattcaagaagagtttgatccgctcgttcaaaatggag ataagaaaatatcgatgccggacgcacctgatgcacaaagtgagactgaagattggggcgaaattgacgaattgttaggt gaccttgacgaggagaaaacgtcacctgatgacgtgaaagtacacatagaggatgctgctgttaaagaaaaaggcaacgg agaaatggaatacgcccaagttaggagctag |
|
Protein
| Protein ID | pfu_aug2.0_571.1_04347.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_571.1_04347.t1 MNVFSILPLLLIASVKGFNIETKFIDVVSVSNSQPGSYFGFALDFVTHGSKSWLVIGAPKLNDVSAGNRTGANQPNVNQG KDHMWFGGSMAAAENSVTACAPRWINKVNSSEYYMNGLCYVIPSGYFAETRFITPRVRSLLNQFPDKQHIAPDSARNDMT WEYGLGTAGLSVIYNLSSQTQEHTIYGAPGVNEFTGGAISFQTDNEVYVHGQNLGAAYESKMFGYALAMGMFYGGVESNK EDYYLAVGGPRAEGTGEVLILKHDYTLHTRLRINEPGSYFGSSLCAVQRTSVSSETLLLVGAPTYSKLTKYNKFYTSTVE QGAVFVYRLKENQADAIQMLQSSTTAKSRFGMAMSDLGDINGDDFHDVVIGAPFEEDQKGVIYIYNGYKNGFLETQRIVG NDMDTSLRGYFGYSFAQNNINFNGDKSNEFAVGAFMSDSAVILFTQPVIAMQVTARQSTNLTTIGDPDMTIRACFKYTGD STILPGDVNVDYKIRADVEFSGRTKRVCMVNGQFCDYEVMELNQQIPGFNFDPKCLTPFTVRLTDTQEIRELFIPIVFSI QFNISDANACTRNICPVINRFYGNLDNPTTREVKAATQEIRELFIPIVFSIQFNISDANACTRNICPVINRFYGNLDNPT TREVKAATVDLKKNGCGADNLCETYLTLQSVVVKYHDSENVLILGPKSKMTVDVTVRVSNEPSYNTKIRFLCDQELSYVR SIDVGSQIGMKCSVIRTPFGRIEIECDTNPSQLGVESGSEIKVSLEFDARLLKPNIKSFKFEVEVVTKSINANIGQNRRT LYIPVKAKVDGAFDRLAAPEVYVTKKDREEFETMKHIITFFNRGPSNIDDNTTFTVTYPSGRIGGKWVVSVVEGVMNISN AQPDLQVSCNTKTTMVTDGDSSSYKDFRAISFNTMNSTSEEDMNAQYDCTKPGGSCHMVKCTVRPIPADSYVLFRLVYSV DPKLYHRAGGQDPSVKSVDLVSKVDVQLPASVTATMIQNDNFAKTEVLPSKQKAEPIPSWIIVLAVVAALLVIGIIVLIL WKCGFFKRKDKEKLLERQKEEEEDKDGTANPAIKVTPADDQIQEEFDPLVQNGDKKISMPDAPDAQSETEDWGEIDELLG DLDEEKTSPDDVKVHIEDAAVKEKGNGEMEYAQVRS |
|