Gene
| Gene Model ID | pfu_aug2.0_5742.1_09484 |
|---|---|
| Locus | scaffold5742.1 : 19587 ... 23555 : - |
| To GenomeBrowser | scaffold5742.1:19587..23555 |
| Genes list of scaffold | scaffold5742.1 |
| Synonym | pfu_aug1.0_30496.1_62608 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5742.1_09484.t1 | 2 | 1 | zf-B_box | 21 | 63 | 6.4e-09 | 35.5 | 3.7e-08 | 6.9e-05 | 22.6 |
| pfu_aug2.0_5742.1_09484.t1 | 2 | 2 | zf-B_box | 77 | 109 | 6.4e-09 | 35.5 | 1.4e-06 | 0.0026 | 17.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5742.1_09484.t1 | gi|697824133|ref|XP_009632526.1| | PREDICTED: transcription intermediary factor 1-beta [Egretta garzetta] | 3.0e-14 |
| pfu_aug2.0_5742.1_09484.t1 | gi|557289811|ref|XP_006027535.1| | PREDICTED: transcription intermediary factor 1-beta-like [Alligator sinensis] | 8.0e-14 |
| pfu_aug2.0_5742.1_09484.t1 | gi|529426469|ref|XP_005233066.1| | PREDICTED: transcription intermediary factor 1-beta-like [Falco peregrinus] | 9.0e-14 |
| pfu_aug2.0_5742.1_09484.t1 | gi|564256859|ref|XP_006267392.1| | PREDICTED: transcription intermediary factor 1-beta-like [Alligator mississippiensis] | 1.0e-13 |
| pfu_aug2.0_5742.1_09484.t1 | gi|694639886|ref|XP_009478205.1| | PREDICTED: transcription intermediary factor 1-beta, partial [Pelecanus crispus] | 1.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_5742.1_09484.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5742.1_09484.t1 atggccacaggatttactaggacaccactggcagaatccattcaatatcactacgatattttgtgtgatatctgcgacga atctcatgttgccagctggtcctgcaatacttgtggacagaacttgtgtgagacatgcaaaaggaatcatctaaaaatca gttttacaaaaaatcacccaattttgccgctacttgacaggcatgaatcggagggcgggcatggcattttatgtacacat caccaagagcccatacttttcttttgcgattgccaggaggaaacttgtcgaaaatgtcagtccgaagcacataggggaca caaatcacaagatatagccattcatgccaaaagaatcaggaatgagattgagaaagaatttgaatccaagaaacgttcaa tagttgatgccagagaaaaggttagatcattgcaagacgaaaaacaagagtttgactaccagagcgaaactgacatagaa agagtaaagaagacattagatggtctctttaagaatttccgagaacaggcgaagagtcttattaaagacgtagaatcaag attggaaaagtcagaggatgatttcaaaagtgaatcaagctcagcaggcccagacgatgttctcattacaagcggtgttc agtcgtcgttcatccggattttaaaaggagatggacatctcgcagactttaaagatatcacaccattcttcccctttgga atgtgctgtagctctgacggtcacgtatttgtttgccttcaaaaatctgaatttgctggaaaagtgattcagctcaccat gacgggagaagttgttaaggaattcttcctccataactactttacacctacaagaataatgaatactccctctggcgtga tagtcaagaacgactgttcgttgatcaatctgaagggaaacacgtttgtaaaattcaacacagacgattgtgtatcatca gtgtgttgcgattctcgaggcaacattttcggagccggaatagataaggactctaacgaaccatgtgtaaaaaaggttca caagaagtctaaagttacatttcctttaccatttgttgctacttgttttgtagctgatattgcatgcgacatccacagca atgttttgtgggtagcttcttcagatggtaacattcaagctgtagggacagatttctttatgcgcgagaaatag |
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Protein
| Protein ID | pfu_aug2.0_5742.1_09484.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5742.1_09484.t1 MATGFTRTPLAESIQYHYDILCDICDESHVASWSCNTCGQNLCETCKRNHLKISFTKNHPILPLLDRHESEGGHGILCTH HQEPILFFCDCQEETCRKCQSEAHRGHKSQDIAIHAKRIRNEIEKEFESKKRSIVDAREKVRSLQDEKQEFDYQSETDIE RVKKTLDGLFKNFREQAKSLIKDVESRLEKSEDDFKSESSSAGPDDVLITSGVQSSFIRILKGDGHLADFKDITPFFPFG MCCSSDGHVFVCLQKSEFAGKVIQLTMTGEVVKEFFLHNYFTPTRIMNTPSGVIVKNDCSLINLKGNTFVKFNTDDCVSS VCCDSRGNIFGAGIDKDSNEPCVKKVHKKSKVTFPLPFVATCFVADIACDIHSNVLWVASSDGNIQAVGTDFFMREK |
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