Gene
| Gene Model ID | pfu_aug2.0_5782.1_09488 |
|---|---|
| Locus | scaffold5782.1 : 3606 ... 9100 : + |
| To GenomeBrowser | scaffold5782.1:3606..9100 |
| Genes list of scaffold | scaffold5782.1 |
| Synonym | pfu_aug1.0_650.1_65566 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cd40 ligand | GO:0044763 GO:0048522 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5782.1_09488.t1 | 2 | 1 | TNF | 45 | 62 | 1.3e-22 | 79.6 | 0.37 | 1900.0 | -1.7 |
| pfu_aug2.0_5782.1_09488.t1 | 2 | 2 | TNF | 129 | 246 | 1.3e-22 | 79.6 | 2.7e-26 | 1.3e-22 | 79.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5782.1_09488.t1 | gi|558170010|ref|XP_006124829.1| | PREDICTED: tumor necrosis factor ligand superfamily member 14 [Pelodiscus sinensis] | 7.0e-13 |
| pfu_aug2.0_5782.1_09488.t1 | gi|591348206|ref|XP_007068723.1| | PREDICTED: CD40 ligand [Chelonia mydas] | 2.0e-12 |
| pfu_aug2.0_5782.1_09488.t1 | gi|597793486|ref|XP_007259540.1| | PREDICTED: tumor necrosis factor ligand superfamily member 6-like [Astyanax mexicanus] | 2.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_5782.1_09488.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5782.1_09488.t1 atggcgaacatcaagggaaatataaaaacctgcaagtgcttgtcaatcggacttgtgtttactaacatagtcttactgct ttgtacatttgctattactttagcttggttcctacagcgacagaagttcgaaccaaaagaacattcacttttgacttgct tgccgtctgcgagtgatagcaaggactgcttttcccatgttgatgatttgtgctgtagcaatgtgacactatcagattct attaaacataacaccaagaaaagatatgaagaacagaccaatgaagaaaatacacatttagctcagcattgtctctccac accagggaatataacggcagcaagggttgtcggaatagacaatgacattgcacctacgacaatcttacaatggcgccaga acaaccatagaggattcctcaatgaagtcaaatacttatcaggaagattcatcattgaaaggaatggatattatttcata tacagccaagtcacatttatcgaacactccgtaaacgaacatgacaagctgtcacactccatttacagacaaactccatt gaacaatgaaaaacttgttgagagtgttcgatcacactgtagactacagacaggagagagtgacagttcccggtttgttg gatcagtctttctcttaaacaaaggtgatgaaatatacgtacatgttactgatccgacgaaagtgtcacgtgccgaacac gcaaattactttggtcttcatattatatag |
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Protein
| Protein ID | pfu_aug2.0_5782.1_09488.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5782.1_09488.t1 MANIKGNIKTCKCLSIGLVFTNIVLLLCTFAITLAWFLQRQKFEPKEHSLLTCLPSASDSKDCFSHVDDLCCSNVTLSDS IKHNTKKRYEEQTNEENTHLAQHCLSTPGNITAARVVGIDNDIAPTTILQWRQNNHRGFLNEVKYLSGRFIIERNGYYFI YSQVTFIEHSVNEHDKLSHSIYRQTPLNNEKLVESVRSHCRLQTGESDSSRFVGSVFLLNKGDEIYVHVTDPTKVSRAEH ANYFGLHII |
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