Gene
| Gene Model ID | pfu_aug2.0_579.1_30936 |
|---|---|
| Locus | scaffold579.1 : 125366 ... 153175 : - |
| To GenomeBrowser | scaffold579.1:125366..153175 |
| Genes list of scaffold | scaffold579.1 |
| Synonym | pfu_aug1.0_9461.1_53360 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_579.1_30936.t1 | 1 | 1 | Transposase_1 | 93 | 129 | 7.4e-06 | 25.6 | 2.6e-09 | 1.9e-05 | 24.3 |
| pfu_aug2.0_579.1_30936.t1 | 1 | 1 | Hep_59 | 227 | 324 | 9.6e-28 | 96.6 | 3.2e-31 | 2.4e-27 | 95.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_579.1_30936.t1 | gi|676438083|ref|XP_009048413.1| | hypothetical protein LOTGIDRAFT_55706, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_579.1_30936.t1 | gi|524885025|ref|XP_005099124.1| | PREDICTED: uncharacterized protein C9orf78 homolog [Aplysia californica] | 0.0 |
| pfu_aug2.0_579.1_30936.t1 | gi|288684380|ref|NP_001165770.1| | uncharacterized protein C9orf78 homolog [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_579.1_30936.t1 | gi|147904475|ref|NP_001087905.1| | chromosome 9 open reading frame 78 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_579.1_30936.t1 | gi|17068385|gb|AAH17570.1| | Chromosome 9 open reading frame 78 [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_579.1_30936.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_579.1_30936.t1 atgatcaataaagtctatgatattgttatgactgacagacgaattacagaaagatatatagccagtacagttggcatttc acaggaaagagtacattccattctgactgaagatcttgaaatgagaaagctttcggaccgttgggtaccaagacaatcac aaggcgcactttatcgcatgctaatcttaaccttttcgaaaaagggagatccagtcaattttcttcaaagatttgtcact atggatgaaacatgggtctatcattttaccccagaggccaaacaacagtcgaaacggtggaagcatcctggctcacccca accaaagagggcaaagactgttccttcagctgggaaggctatggcctcggaattctggaatgcagaagacatacgagtag acattctgatatggagtctacgtgtacactgggaaggaagtttttgttgtaagtgtagtcacccacgagtcaacctacaa gaaataaaagagatacaaagattgagggacaaacagaatggagttagtgctacagctctggcccttggcaaaaaaatccc taaaacagaaacagtgtcatcaaatgatccattcaaaagagaaacaggaggatttgttgatatgaaagccctgaaaaaga aaaaactatcaacagaggatatggaggctataggtacagcatttgctgcagaaaccaacaggagagacgaagatacagaa atgttgaaatatgttgaggatgaattggccaaaaggaaaggtcatttgaaggatgacagcccagataaactaagtcaaca taaagaagattctctgtacgtgctgccagaaaatctaaaaatagaatctaaaaataaaaagacggaagacatgttgtcca atcaaatgttgtcaggaattcctgagattgatctgggtattgaggcgaaaatctcaaacatagaggctacagagaatgcc aaacatacattactactggagaagatgaggaagaaggagaatgaagtgtctgactttgtacctacgaacatggccgtcaa ctttgtacaacataacagatttaacatagaagatcaagctcctattttaaagaagcctacagatgctccaaagccacaac ctgtccgtgtaggagatctggagaaacttaaatcaggtgcagcaatgagtttatttgtgtttgagggaacctccggttct aaaaatagtgctatatag |
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Protein
| Protein ID | pfu_aug2.0_579.1_30936.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_579.1_30936.t1 MINKVYDIVMTDRRITERYIASTVGISQERVHSILTEDLEMRKLSDRWVPRQSQGALYRMLILTFSKKGDPVNFLQRFVT MDETWVYHFTPEAKQQSKRWKHPGSPQPKRAKTVPSAGKAMASEFWNAEDIRVDILIWSLRVHWEGSFCCKCSHPRVNLQ EIKEIQRLRDKQNGVSATALALGKKIPKTETVSSNDPFKRETGGFVDMKALKKKKLSTEDMEAIGTAFAAETNRRDEDTE MLKYVEDELAKRKGHLKDDSPDKLSQHKEDSLYVLPENLKIESKNKKTEDMLSNQMLSGIPEIDLGIEAKISNIEATENA KHTLLLEKMRKKENEVSDFVPTNMAVNFVQHNRFNIEDQAPILKKPTDAPKPQPVRVGDLEKLKSGAAMSLFVFEGTSGS KNSAI |
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