Gene
| Gene Model ID | pfu_aug2.0_5797.1_26102 |
|---|---|
| Locus | scaffold5797.1 : 1 ... 13501 : + |
| To GenomeBrowser | scaffold5797.1:1..13501 |
| Genes list of scaffold | scaffold5797.1 |
| Synonym | pfu_aug1.0_2341.1_08300 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| serine threonine-protein kinase smg1- partial | GO:0000184 GO:0000724 GO:0004674 GO:0005524 GO:0005634 GO:0005829 GO:0006406 GO:0018105 GO:0044822 GO:0046777 GO:0046854 GO:0046872 GO:0046983 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5797.1_26102.t1 | 1 | 1 | FATC | 129 | 160 | 6.6e-12 | 44.6 | 6.8e-16 | 1.0e-11 | 44.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5797.1_26102.t1 | gi|704479630|ref|XP_010073203.1| | PREDICTED: serine/threonine-protein kinase SMG1-like, partial [Pterocles gutturalis] | 4.0e-33 |
| pfu_aug2.0_5797.1_26102.t1 | gi|61651596|dbj|BAD91171.1| | CSG24 [Rattus norvegicus] | 5.0e-33 |
| pfu_aug2.0_5797.1_26102.t1 | gi|148232636|ref|NP_001090280.1| | SMG1 phosphatidylinositol 3-kinase-related kinase [Xenopus laevis] | 2.0e-32 |
Transcript
| Transcript ID | pfu_aug2.0_5797.1_26102.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5797.1_26102.t1 gatctgagggacccgtgggaaccaaatgtgtgtttcaacttcctcaatcaattcttggaatttgtgaaaagatcagtcac tgcagataatcacaaggtggtgtacctgtttgagtgggagcctccaggagacattggttgtaggaggttggaggaggggt caagttattgcttcctacctgactgttatatgttggtattacgatggattgaaaatgacatgtttggatatggaaattta ggaggatcagcacaaagaaaacaagacaaaattattagagacccccgtacaggaaaagctgtacaagagcgcaatacata tgctgtcagtgtatggcgaagagtgaagatgaaattagatggaagagacccagacccaaataaaagactctctgtccatg aacaggttgacttcgttatcaaggaagccaacaatttggacaacttggcagtactatatgaaggttggacaccgtgggtg tga |
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Protein
| Protein ID | pfu_aug2.0_5797.1_26102.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5797.1_26102.t1 DLRDPWEPNVCFNFLNQFLEFVKRSVTADNHKVVYLFEWEPPGDIGCRRLEEGSSYCFLPDCYMLVLRWIENDMFGYGNL GGSAQRKQDKIIRDPRTGKAVQERNTYAVSVWRRVKMKLDGRDPDPNKRLSVHEQVDFVIKEANNLDNLAVLYEGWTPWV |
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