Gene
| Gene Model ID | pfu_aug2.0_58.1_26754 |
|---|---|
| Locus | scaffold58.1 : 182945 ... 197009 : + |
| To GenomeBrowser | scaffold58.1:182945..197009 |
| Genes list of scaffold | scaffold58.1 |
| Synonym | pfu_aug1.0_1185.1_07825 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_58.1_26754.t1 | 3 | 1 | Nop53 | 17 | 96 | 0.0 | 260.6 | 2.3e-23 | 8.4e-20 | 71.1 |
| pfu_aug2.0_58.1_26754.t1 | 3 | 2 | Nop53 | 107 | 140 | 0.0 | 260.6 | 0.00014 | 0.51 | 9.2 |
| pfu_aug2.0_58.1_26754.t1 | 3 | 3 | Nop53 | 148 | 363 | 0.0 | 260.6 | 0.0 | 0.0 | 188.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_58.1_26754.t1 | gi|524890366|ref|XP_005101730.1| | PREDICTED: glioma tumor suppressor candidate region gene 2 protein-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_58.1_26754.t1 | gi|632982065|ref|XP_007907932.1| | PREDICTED: glioma tumor suppressor candidate region gene 2 protein [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_58.1_26754.t1 | gi|387915268|gb|AFK11243.1| | preS1 binding protein [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_58.1_26754.t1 | gi|241653566|ref|XP_002411312.1| | cellular protein, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_58.1_26754.t1 | gi|532036485|ref|XP_005361129.1| | PREDICTED: glioma tumor suppressor candidate region gene 2 protein isoform X1 [Microtus ochrogaster] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_58.1_26754.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_58.1_26754.t1 atggacaacgtgggacagaaaaacacaagaacaagatccaggctggcgaaaaataaaaagaaggcatggcggaaagtaga tgttacagaagtggaggactttctagaggacgaaaggttgcaggaaagaactggaggacttgtagcagatcgaccagatg aacaattatttgttgttgataaatcatgccttgatgtccaggaagaaccagaaccaaagaaaaggaaaagagaacctaaa cctttaagatgtcattcaaatttggtgcttgatactagaataaaagctgcaagaatttcatatttctatctcttattctt ccagaatttattagcaaaggctcatcatgtggaagtaggaaaggtcagagaggagagaaagttacacaatgcattagagt ccaagtttccgaaaatgtcaagattagcattagaggtacctagtctaagtaaaaagccgtacgacatagcagctgtagaa gtcccccacccaggggcctcatataaccctacctatgaggattatatgaatttattagcaaaggctcatcatgtggaagt aggaaaggtcagagaggagagaaagttacacaatgcattagagtccaagtttccgaaaatgtcaagatcagcattagagg aaaactggctagaagagatgtctgcagggcttaaaaacgacaacgagccagatataaaaatagagccagacttactggat aaactatctgtgaatcctccagtacggagagaagacaagaaaacaaagactcagcgaaataaggaaaaactccaaaagaa aaaagacaaattaaaagagctccaaaaagctgacaagacaaacaagagtgaaatattcagattaaagaaaatcaaagctg atataaaagccagggaagaatcactagataagagggctgcccttagacatgagcagcatctgaagaagtcatcacaaaca cggaagctgggtagaacgaaatatgaggaaccagaaattgaagtcaaattgagtgatgagctacagggatctcttagaaa acttaagccagaggggaaccttttagaggacagatacaagagtctgcaaaaacgcaatgtgatagaaccaaggcaacaag ctaagaaatttaggaaatacaagaaaaaacttgtggaaaagagaggacatagaaatataacactgtag |
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Protein
| Protein ID | pfu_aug2.0_58.1_26754.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_58.1_26754.t1 MDNVGQKNTRTRSRLAKNKKKAWRKVDVTEVEDFLEDERLQERTGGLVADRPDEQLFVVDKSCLDVQEEPEPKKRKREPK PLRCHSNLVLDTRIKAARISYFYLLFFQNLLAKAHHVEVGKVREERKLHNALESKFPKMSRLALEVPSLSKKPYDIAAVE VPHPGASYNPTYEDYMNLLAKAHHVEVGKVREERKLHNALESKFPKMSRSALEENWLEEMSAGLKNDNEPDIKIEPDLLD KLSVNPPVRREDKKTKTQRNKEKLQKKKDKLKELQKADKTNKSEIFRLKKIKADIKAREESLDKRAALRHEQHLKKSSQT RKLGRTKYEEPEIEVKLSDELQGSLRKLKPEGNLLEDRYKSLQKRNVIEPRQQAKKFRKYKKKLVEKRGHRNITL |
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