Gene
| Gene Model ID | pfu_aug2.0_580.1_00910 |
|---|---|
| Locus | scaffold580.1 : 165676 ... 184792 : + |
| To GenomeBrowser | scaffold580.1:165676..184792 |
| Genes list of scaffold | scaffold580.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| toll-like receptor 3 | GO:0001819 GO:0006950 GO:0007165 GO:0031323 GO:0043170 GO:0044238 GO:0048522 GO:0048584 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_580.1_00910.t1 | 12 | 1 | LRR_1 | 32 | 46 | 2.9e-06 | 26.5 | 3.5 | 8600.0 | -2.4 |
| pfu_aug2.0_580.1_00910.t1 | 5 | 1 | LRR_8 | 53 | 109 | 2.3e-21 | 75.3 | 1.6e-14 | 3.9e-11 | 42.5 |
| pfu_aug2.0_580.1_00910.t1 | 8 | 1 | LRR_4 | 53 | 89 | 1.9e-17 | 62.4 | 1.3e-08 | 3.2e-05 | 23.4 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 2 | LRR_1 | 53 | 69 | 2.9e-06 | 26.5 | 0.00079 | 1.9 | 8.7 |
| pfu_aug2.0_580.1_00910.t1 | 8 | 2 | LRR_4 | 74 | 111 | 1.9e-17 | 62.4 | 1.4e-08 | 3.5e-05 | 23.3 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 3 | LRR_1 | 74 | 94 | 2.9e-06 | 26.5 | 0.00022 | 0.54 | 10.4 |
| pfu_aug2.0_580.1_00910.t1 | 8 | 3 | LRR_4 | 97 | 145 | 1.9e-17 | 62.4 | 0.00038 | 0.93 | 9.1 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 4 | LRR_1 | 98 | 114 | 2.9e-06 | 26.5 | 0.0064 | 16.0 | 6.0 |
| pfu_aug2.0_580.1_00910.t1 | 5 | 2 | LRR_8 | 124 | 176 | 2.3e-21 | 75.3 | 0.026 | 64.0 | 3.4 |
| pfu_aug2.0_580.1_00910.t1 | 8 | 4 | LRR_4 | 126 | 151 | 1.9e-17 | 62.4 | 0.045 | 110.0 | 2.5 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 5 | LRR_1 | 153 | 165 | 2.9e-06 | 26.5 | 3.5 | 8600.0 | -2.4 |
| pfu_aug2.0_580.1_00910.t1 | 5 | 3 | LRR_8 | 165 | 195 | 2.3e-21 | 75.3 | 0.077 | 190.0 | 1.8 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 6 | LRR_1 | 254 | 262 | 2.9e-06 | 26.5 | 6.0 | 15000.0 | -3.7 |
| pfu_aug2.0_580.1_00910.t1 | 8 | 5 | LRR_4 | 255 | 299 | 1.9e-17 | 62.4 | 0.0012 | 2.9 | 7.6 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 7 | LRR_1 | 284 | 298 | 2.9e-06 | 26.5 | 0.038 | 95.0 | 3.6 |
| pfu_aug2.0_580.1_00910.t1 | 5 | 4 | LRR_8 | 285 | 301 | 2.3e-21 | 75.3 | 0.041 | 100.0 | 2.7 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 8 | LRR_1 | 311 | 320 | 2.9e-06 | 26.5 | 1.5 | 3600.0 | -1.2 |
| pfu_aug2.0_580.1_00910.t1 | 8 | 6 | LRR_4 | 332 | 347 | 1.9e-17 | 62.4 | 0.16 | 390.0 | 0.8 |
| pfu_aug2.0_580.1_00910.t1 | 8 | 7 | LRR_4 | 403 | 446 | 1.9e-17 | 62.4 | 0.00015 | 0.38 | 10.4 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 9 | LRR_1 | 403 | 415 | 2.9e-06 | 26.5 | 3.8 | 9300.0 | -2.5 |
| pfu_aug2.0_580.1_00910.t1 | 5 | 5 | LRR_8 | 431 | 491 | 2.3e-21 | 75.3 | 1.6e-13 | 4.1e-10 | 39.2 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 10 | LRR_1 | 432 | 451 | 2.9e-06 | 26.5 | 0.00064 | 1.6 | 9.0 |
| pfu_aug2.0_580.1_00910.t1 | 8 | 8 | LRR_4 | 456 | 495 | 1.9e-17 | 62.4 | 2.9e-10 | 7.2e-07 | 28.6 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 11 | LRR_1 | 457 | 477 | 2.9e-06 | 26.5 | 0.00051 | 1.3 | 9.3 |
| pfu_aug2.0_580.1_00910.t1 | 12 | 12 | LRR_1 | 480 | 495 | 2.9e-06 | 26.5 | 2.1 | 5200.0 | -1.7 |
| pfu_aug2.0_580.1_00910.t1 | 1 | 1 | TIR | 625 | 765 | 5.4e-09 | 35.6 | 4.6e-12 | 1.1e-08 | 34.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_580.1_00910.t1 | gi|625248160|ref|XP_007615367.1| | PREDICTED: toll-like receptor 3 [Cricetulus griseus] | 2.0e-16 |
| pfu_aug2.0_580.1_00910.t1 | gi|354504417|ref|XP_003514272.1| | PREDICTED: toll-like receptor 3 [Cricetulus griseus] | 2.0e-16 |
| pfu_aug2.0_580.1_00910.t1 | gi|524914001|ref|XP_005111821.1| | PREDICTED: uncharacterized protein LOC101855917 [Aplysia californica] | 2.0e-15 |
| pfu_aug2.0_580.1_00910.t1 | gi|701326589|ref|XP_010021333.1| | PREDICTED: toll-like receptor 2, partial [Nestor notabilis] | 2.0e-15 |
| pfu_aug2.0_580.1_00910.t1 | gi|507682667|ref|XP_004639854.1| | PREDICTED: toll-like receptor 3 [Octodon degus] | 3.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_580.1_00910.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_580.1_00910.t1 atggttgtcttggcaactattgctcttactgtgtttatatctttgacagaatctctccattcgggtaacaagtgtacgaa gatagcagagaaccatcttgactgcagcaatttgggattaatagctttcccgtctgatttaccgaggaacacattgtatt tggacctcagtaacaataggatcaaagaaataagaaaaagagatttgacatcaaatcacaagttacagtacctaaatctt agaagcaacaaaattaacgaaatagagaggggagcattctgtgatataacaaatttaaaagaggcagacttatcttcaaa caacataacagatgcaactttgggctgcaataattctgttcaagtgtcatcgattgagcgactccacattcaaaataatt cttaccacatcaaaggggtaaatttttcagctttcgaaaagttgacgttcctgtcattagatgttcgtaaaaactttaaa ttcgattatcaattgaggtcgttgactcgactaaaaactttaaagcttttctcacgacaacatgttaggatacaaaacga ttcatttgagggattgatagacctaccgatatcccacttggccttacattttggcaaccatattcaaagaccgattgcca tagattatcttcgtccatttacgaaagttaaattcatccaaatcgaatttggagggttgtttactacgatcaaggacact ttgaggtcactctgggggctcgaaggaagacaaattaattcactgaatatgggttctaattatattatcactgggatgac acaggagcttaacgaaagagatcttaaacctctatcaaagatttgtgtaaaaaatatcaatttatcaaaaaactttataa caaagatctccacttttgttttgtggaactcgacatttagtaactgtgttgaaaaagtagacatgtctggaaacctattt cgaatgaacgattaccttgtgttcctgtatatggccaacatgccgaaaataaagaaaatcaacatagccaacatacccct gtatgaagaagaagaagaaaaatatggtacaatgcatcgtggatctaatttggaggcacagaaaagcacgttcctcccga cgaggacattacaaaataaggagacgcaacgctggaagtgtagtggtctcaatccaacatttttgtcaaagtcgaaatgt tttctaaacctggtcaccctgaatgcgaggaactctgatcttgggaaaggcttgatttcagacaaagatgttagatttct tagaggtctccgtcatttgaagaaagtagatctatcacgtaacgatctctcaagactccatgataacttctttcacgatc agagaaaaagcttacaaaaagtcaatctcacgaataacaacttcgatcgaatacctcctgcaatctggaaattgcaaaat ttgaaggctttgggcttgaagaagaatagtattcagtccttcacaagtgaggaaagggatttgataagtagaagaaaaaa tcttgtaattgacctggacgaaaatctttttgcatgctcttgtgataatttggctactttaaaatggatggcaatttata attctagttttagcgacacgaaagcaataaagtgcagaaacatggaggaaaatattacggtccatgaaattcttgttaat cttcgacaattcgagttgaagtgtatcgaagaaatggtactgaacattacagcatcaatgttatgcctgatgatattaat catatgtggtgctgccataggactgaagtacaagtacttgattaagttccattacttgcgattaaaaggaatgcttacag gaaatgctagtcaagattttgaaaataatatttttctttcgtttgccaacattgccggtgaagtaagccaagatgaaaac tggatatggaagtttctgaatccgtatctatccaatgagttagagctacgtgtttattctgactggcattttgaatacgg ttccgattatttcaatgatgtacacacgtatatgggaaactgcaggaaaataattatagtgttaagtaagaaattcttga agtgggaaaaaagtacatgtcatatggaaatggctagaaaccatgcattttacagcaagagaatctctttggttgtcatt ttctttgacgatttaacaacaacagacttaccaaaatgtcttgtaacagtctggttcaaaacgaaatttctattttggcc ttccgatggatcttttgaagaggaacgtagacaattccgacataaacttatggttgctttgaatgactaa |
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Protein
| Protein ID | pfu_aug2.0_580.1_00910.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_580.1_00910.t1 MVVLATIALTVFISLTESLHSGNKCTKIAENHLDCSNLGLIAFPSDLPRNTLYLDLSNNRIKEIRKRDLTSNHKLQYLNL RSNKINEIERGAFCDITNLKEADLSSNNITDATLGCNNSVQVSSIERLHIQNNSYHIKGVNFSAFEKLTFLSLDVRKNFK FDYQLRSLTRLKTLKLFSRQHVRIQNDSFEGLIDLPISHLALHFGNHIQRPIAIDYLRPFTKVKFIQIEFGGLFTTIKDT LRSLWGLEGRQINSLNMGSNYIITGMTQELNERDLKPLSKICVKNINLSKNFITKISTFVLWNSTFSNCVEKVDMSGNLF RMNDYLVFLYMANMPKIKKINIANIPLYEEEEEKYGTMHRGSNLEAQKSTFLPTRTLQNKETQRWKCSGLNPTFLSKSKC FLNLVTLNARNSDLGKGLISDKDVRFLRGLRHLKKVDLSRNDLSRLHDNFFHDQRKSLQKVNLTNNNFDRIPPAIWKLQN LKALGLKKNSIQSFTSEERDLISRRKNLVIDLDENLFACSCDNLATLKWMAIYNSSFSDTKAIKCRNMEENITVHEILVN LRQFELKCIEEMVLNITASMLCLMILIICGAAIGLKYKYLIKFHYLRLKGMLTGNASQDFENNIFLSFANIAGEVSQDEN WIWKFLNPYLSNELELRVYSDWHFEYGSDYFNDVHTYMGNCRKIIIVLSKKFLKWEKSTCHMEMARNHAFYSKRISLVVI FFDDLTTTDLPKCLVTVWFKTKFLFWPSDGSFEEERRQFRHKLMVALND |
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