Gene
| Gene Model ID | pfu_aug2.0_580.1_00911 |
|---|---|
| Locus | scaffold580.1 : 197306 ... 201725 : - |
| To GenomeBrowser | scaffold580.1:197306..201725 |
| Genes list of scaffold | scaffold580.1 |
| Synonym | pfu_aug1.0_13039.1_61141 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_580.1_00911.t1 | 2 | 1 | RVT_1 | 12 | 126 | 1.5e-06 | 27.7 | 1.5e-09 | 1.1e-05 | 24.8 |
| pfu_aug2.0_580.1_00911.t1 | 2 | 2 | RVT_1 | 296 | 319 | 1.5e-06 | 27.7 | 0.2 | 1500.0 | -1.7 |
| pfu_aug2.0_580.1_00911.t1 | 1 | 1 | rve | 545 | 648 | 1.6e-12 | 47.5 | 5.5e-16 | 4.1e-12 | 46.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_580.1_00911.t1 | gi|449684224|ref|XP_002155614.2| | 0.0 | |
| pfu_aug2.0_580.1_00911.t1 | gi|524915581|ref|XP_005112584.1| | PREDICTED: uncharacterized protein K02A2.6-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_580.1_00911.t1 | gi|198411777|ref|XP_002121094.1| | PREDICTED: uncharacterized protein K02A2.6-like, partial [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_580.1_00911.t1 | gi|391331165|ref|XP_003740021.1| | PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_580.1_00911.t1 | gi|391339345|ref|XP_003744012.1| | PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus occidentalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_580.1_00911.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_580.1_00911.t1 atggcccgactcgtacctccgaacaagaaaaaatcggtcctcgatgcctggaacggatatcatagtgtaccgatacaccc cgatgatcgtcatttcacaacatttatcactccatggggtagataccgatacaaaaccgctcgtcagggatatattgcat ctggagatggatatactcgacgctatgatgcaattgtcgccggtataccagacaagactaaatgtattgacgacgtcctt ctgtggtcgaattccatcgaggatatcttctttcaagtcgctcaatggctcaacgcatgtggtcgaaatggcataactct caacccggacaaatttgactttgcacaggatcacgttgagttcgcaggcttcgaaataacagaagatagtgttcgaccat gctctaaattcattaaagccatcgccgattttccgacaccgaagaccataactgatatacgctcatggtttggacttgtc aatcaggtctcgtatgcgttcagtatggctgacaaaatgctacccttcagagagctccttaaaccgaacaagaaattcac atgggacgatgagctggatcttctgtttaatgaatctaaagacgtgatcatcagagagatagacgaaggcgtcagaatat ttgacaaaagcaaaccaacatgcctggcaaccgactggtcaaagacaggcattgggttctggctcttccaaaaacactgt tcttgtactagacaagaacccttttgctgcagaacaggctggaaaatcacattggtgggaagcagattcaccaatgccgc agaatctcgatatgccccgatcgaaggggaggccttagccgttgcagacgctctagacaaggcgagatatttcgtgttgg gatgcgacaacctgttcgtagctgtagatcacaaaccgctcttgaaaatcttgggtgaaatatcacttgaagaattacca aactcaagattaagaaatctgaaagaaaaaactctgcgatatcgctttcgcgtaatccacatacctggtataaaacaccg tgcagctgattgcgtctctcgacatccgactggtgatccagagttgctatgcttactggacgactcgcaatctacaattg agtcaacgtacacgcctaactcgttcgatattattcgctgctaccaggattcagacgacatagacaccgtcttgattgct tctgctgcctgttccctcggatcattatccattaaatccgttacttgggacagggtcagacttgaaacagcaagtgacaa taacatgcaccttctcctgcaactcatcaaatccggattgcctaactctcgaaatcaatatccatctcctttgcgcgaat actttaaacaccgagaccatctccacaccatcgacggtgtagtcatgtacaaggaccgcatagtgataccacctacactt cgaaatgaggttctctcagccttgcattctgctcaccagggtgtcactactatgacctcgcgcgctgagagttcagtttt ctggcccggcatatcacccgttattatagagacaagagcacaatgcaatcactgtaatcgcattgctccctccaatccga atgccccgccagcacccctgataccgcctaactaccccttccaatgcatatgtgccgatttcttccatcacaggggtatt tattacttggtcatcgtagacagatattcgaattggccaataatcgagaagtctaatggagcaactggactaatagactg tttgcgtcgaacatttgtcacattcggtatcccaacagaactagcatccgatggtggacccgaattcaccgccttaacta ttcggcaatttctcaaagattggggtgttcatcatcgtctttcctcggttgccttccctcacaacaactgtcgcgctgaa gttggagtcaaaaccgtcaaacgcctaatcgctgacaataccaattctcatggcaatctgaacactgactctttgcaaaa agctatgctccaatacaggaacacacctgatcgggacacaaaactttccccggccatgcatgtgttcggacttcatacct atacctcccgggaagtataa |
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Protein
| Protein ID | pfu_aug2.0_580.1_00911.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_580.1_00911.t1 MARLVPPNKKKSVLDAWNGYHSVPIHPDDRHFTTFITPWGRYRYKTARQGYIASGDGYTRRYDAIVAGIPDKTKCIDDVL LWSNSIEDIFFQVAQWLNACGRNGITLNPDKFDFAQDHVEFAGFEITEDSVRPCSKFIKAIADFPTPKTITDIRSWFGLV NQVSYAFSMADKMLPFRELLKPNKKFTWDDELDLLFNESKDVIIREIDEGVRIFDKSKPTCLATDWSKTGIGFWLFQKHC SCTRQEPFCCRTGWKITLVGSRFTNAAESRYAPIEGEALAVADALDKARYFVLGCDNLFVAVDHKPLLKILGEISLEELP NSRLRNLKEKTLRYRFRVIHIPGIKHRAADCVSRHPTGDPELLCLLDDSQSTIESTYTPNSFDIIRCYQDSDDIDTVLIA SAACSLGSLSIKSVTWDRVRLETASDNNMHLLLQLIKSGLPNSRNQYPSPLREYFKHRDHLHTIDGVVMYKDRIVIPPTL RNEVLSALHSAHQGVTTMTSRAESSVFWPGISPVIIETRAQCNHCNRIAPSNPNAPPAPLIPPNYPFQCICADFFHHRGI YYLVIVDRYSNWPIIEKSNGATGLIDCLRRTFVTFGIPTELASDGGPEFTALTIRQFLKDWGVHHRLSSVAFPHNNCRAE VGVKTVKRLIADNTNSHGNLNTDSLQKAMLQYRNTPDRDTKLSPAMHVFGLHTYTSREV |
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