Gene
| Gene Model ID | pfu_aug2.0_581.1_04360 |
|---|---|
| Locus | scaffold581.1 : 77396 ... 80202 : + |
| To GenomeBrowser | scaffold581.1:77396..80202 |
| Genes list of scaffold | scaffold581.1 |
| Synonym | pfu_aug1.0_67499.1_34771 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| elongator complex protein 6 | GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_581.1_04360.t1 | 1 | 1 | DUF2348 | 4 | 206 | 2.5e-29 | 102.1 | 2.0e-33 | 2.9e-29 | 101.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_581.1_04360.t1 | gi|157817755|ref|NP_001102252.1| | elongator complex protein 6 [Rattus norvegicus] | 1.0e-27 |
| pfu_aug2.0_581.1_04360.t1 | gi|354484237|ref|XP_003504296.1| | PREDICTED: elongator complex protein 6 isoform X1 [Cricetulus griseus] | 5.0e-27 |
| pfu_aug2.0_581.1_04360.t1 | gi|632983283|ref|XP_007908570.1| | PREDICTED: elongator complex protein 6 [Callorhinchus milii] | 7.0e-27 |
| pfu_aug2.0_581.1_04360.t1 | gi|557021273|ref|XP_006010935.1| | PREDICTED: elongator complex protein 6 [Latimeria chalumnae] | 8.0e-27 |
| pfu_aug2.0_581.1_04360.t1 | gi|674032610|ref|XP_008828899.1| | PREDICTED: elongator complex protein 6 [Nannospalax galili] | 1.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_581.1_04360.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_581.1_04360.t1 atgagaaatgaacatccagtttgttttgtgtcattgtcacagtcatttggacattacaatgtagtggcaacaaaatgggg atcaccattgacgttatacaaggaaaagggtattttgagctttatcgacattttgagtatgacgagagaatgtcttgggg acgacacaaagaatcattcttttcttcttggagtaagtgcaaatcccaaaggatcaatgaaagaactgattgatttaata aaacaaaagtatgacaaattaaaagaatgcacatcaaagacacctgttattataatagacaatttgagtctgtggattga tattggctattcaattaatcaagtcatacattttgtgaacgtgttgaatcggctagttttgaaaccttgccagccagatt tagaggcagggtcatttatatcaaatcttgatagtggattgactcatgatgatattgacaaaacagttctgtggaaatac atgtctcatatgtctgatatgacgatagaggtttcaggattggacagtggtttttgtaaagaagttcatgggaagataaa ggttagctggaaggattcactactaaagataacttcgaggattatgcaatttcgagtgatggacaaaagcattgccttat ttgcaagtggaatgtcaagtgctgttatttga |
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Protein
| Protein ID | pfu_aug2.0_581.1_04360.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_581.1_04360.t1 MRNEHPVCFVSLSQSFGHYNVVATKWGSPLTLYKEKGILSFIDILSMTRECLGDDTKNHSFLLGVSANPKGSMKELIDLI KQKYDKLKECTSKTPVIIIDNLSLWIDIGYSINQVIHFVNVLNRLVLKPCQPDLEAGSFISNLDSGLTHDDIDKTVLWKY MSHMSDMTIEVSGLDSGFCKEVHGKIKVSWKDSLLKITSRIMQFRVMDKSIALFASGMSSAVI |
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