Gene
| Gene Model ID | pfu_aug2.0_586.1_20936 |
|---|---|
| Locus | scaffold586.1 : 1 ... 12313 : + |
| To GenomeBrowser | scaffold586.1:1..12313 |
| Genes list of scaffold | scaffold586.1 |
| Synonym | pfu_aug1.0_2856.1_30262 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_586.1_20936.t1 | 2 | 1 | zf-rbx1 | 107 | 153 | 3.1e-08 | 33.5 | 4.4e-05 | 0.044 | 13.8 |
| pfu_aug2.0_586.1_20936.t1 | 3 | 1 | zf-RING_5 | 116 | 125 | 1.4e-06 | 27.8 | 0.29 | 290.0 | 1.3 |
| pfu_aug2.0_586.1_20936.t1 | 2 | 1 | zf-Apc11 | 118 | 154 | 5.3e-07 | 29.3 | 0.0043 | 4.2 | 7.2 |
| pfu_aug2.0_586.1_20936.t1 | 3 | 1 | zf-RING_2 | 120 | 135 | 5.4e-09 | 35.7 | 0.029 | 29.0 | 4.5 |
| pfu_aug2.0_586.1_20936.t1 | 3 | 2 | zf-RING_5 | 122 | 145 | 1.4e-06 | 27.8 | 0.084 | 83.0 | 3.0 |
| pfu_aug2.0_586.1_20936.t1 | 3 | 2 | zf-RING_2 | 141 | 149 | 5.4e-09 | 35.7 | 0.021 | 21.0 | 5.0 |
| pfu_aug2.0_586.1_20936.t1 | 3 | 3 | zf-RING_5 | 213 | 252 | 1.4e-06 | 27.8 | 1.4e-09 | 1.4e-06 | 27.8 |
| pfu_aug2.0_586.1_20936.t1 | 2 | 2 | zf-rbx1 | 214 | 251 | 3.1e-08 | 33.5 | 2.2e-07 | 0.00021 | 21.3 |
| pfu_aug2.0_586.1_20936.t1 | 3 | 3 | zf-RING_2 | 215 | 251 | 5.4e-09 | 35.7 | 1.4e-10 | 1.4e-07 | 31.1 |
| pfu_aug2.0_586.1_20936.t1 | 2 | 2 | zf-Apc11 | 219 | 256 | 5.3e-07 | 29.3 | 2.2e-07 | 0.00022 | 21.0 |
Transcript
| Transcript ID | pfu_aug2.0_586.1_20936.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_586.1_20936.t1 gtggatacaacctccacaaccctagcagcagtagctctccaagatcacctcgtcagatcacttaatctgggcgcgcctct cagccttggaccaaggaacgttggactgggacctgccgctagggcacagaaaaaacagaagaaagagatcaaatctttaa cagatactggactgaataaagacaaaaaactaaggaagccagttgaaaaggaaaaggaatatgttcttgatgacaaacca ccacctctaacacttgctcagaaatttggcttggtggacgccccggagcaactgttatcagaagctgaatggcagaaagc caaggaaaaatcaaaccaacgagaggattctagtcaaccatgtgttatctgcaaggaagattttggaacccaagagcagg ctgtacagagaggaaattccgagtgtcctatctgcctaggtgctctaggttcccacagctatatcgatagtagaacttcc atacccaaaacccaaacggtacaagatctctaccactccttgtcaaaaccaacggaaaaacctgctagcggtgaatctgc gagagcgagtcaaagtcaaaacacaaaatccaaaaatcacagtacaaacgccagtcacacggaaacaagtggatcgtcca aagccagaaagacggtgctattatcctgttctcacgtatttcatgacgtatgtttacagacgtttgaagatctgacgtta tccgagggtagaccacaatgccctgtgtgtagatctgcttatcagaaaaagatcattgcttactag |
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Protein
| Protein ID | pfu_aug2.0_586.1_20936.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_586.1_20936.t1 VDTTSTTLAAVALQDHLVRSLNLGAPLSLGPRNVGLGPAARAQKKQKKEIKSLTDTGLNKDKKLRKPVEKEKEYVLDDKP PPLTLAQKFGLVDAPEQLLSEAEWQKAKEKSNQREDSSQPCVICKEDFGTQEQAVQRGNSECPICLGALGSHSYIDSRTS IPKTQTVQDLYHSLSKPTEKPASGESARASQSQNTKSKNHSTNASHTETSGSSKARKTVLLSCSHVFHDVCLQTFEDLTL SEGRPQCPVCRSAYQKKIIAY |
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